Browse Element(s) Details


Os.54440.1.S1_at

Description gb:AK105231.1
DB_XREF= gi:32990440
TID=Os.54440.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54440 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-111-F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-111-F09, full insert sequence.
FL= gb:AK105231.1 gb:AK105171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5318011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53120Os.57563.1.S1_s_at3/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120OsAffx.26587.1.S1_x_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120Os.57563.1.S1_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53130OsAffx.26585.1.S1_s_at8/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.46481.2.S1_x_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.28071.1.S1_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53140OsAffx.26586.1.S1_at11/114+31431458..31431901hypothetical protein
LOC_Os04g53150NANA4+31433800..31435434hypothetical protein
LOC_Os04g53160OsAffx.26587.1.S1_x_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53160Os.57563.1.S1_s_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53170Os.28071.1.S1_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53170OsAffx.26585.1.S1_s_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53180Os.54440.1.S1_at11/114+31447144..31447965expressed protein
LOC_Os04g53190Os.15210.2.S1_x_at11/114+31450157..31455532FAD binding domain containing protein, expressed
LOC_Os04g53200Os.10836.1.S1_a_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.1.S1_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.2.S1_at10/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53210Os.6585.1.S1_at11/114+31469654..31473439expressed protein
LOC_Os04g53210Os.42814.1.S1_x_at1/114+31469654..31473439expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54440.1.S1_at--972--1591Chr04:31447681..31447705 (25 bp)
AGCTGTCGGCGAGCTACGCGCTGCT
LOC_Os04g53180
Os.54440.1.S1_at--798--9251Chr04:31447605..31447629 (25 bp)
TCCTCGCAATGTGATGGTCGGCAGC
LOC_Os04g53180
Os.54440.1.S1_at--238--1611Chr04:31447580..31447604 (25 bp)
AGCTGCAGCTCGTTGGTCCTGGTGC
LOC_Os04g53180
Os.54440.1.S1_at--600--5391Chr04:31447439..31447463 (25 bp)
GAAGCAGCAGCGTGCTCCGAGATCG
LOC_Os04g53180
Os.54440.1.S1_at--1142--4131Chr04:31447413..31447437 (25 bp)
CGCGTAAATATATTCGATCCGCATA
LOC_Os04g53180
Os.54440.1.S1_at--818--9871Chr04:31447384..31447408 (25 bp)
TACAGTGATGCTCTCGTTGTGGTTT
LOC_Os04g53180
Os.54440.1.S1_at--40--5551Chr04:31447347..31447371 (25 bp)
GAAACGTGTCATACTACTACGTCCT
LOC_Os04g53180
Os.54440.1.S1_at--404--2011Chr04:31447332..31447356 (25 bp)
ACTACGTCCTTTCCCATATATAATT
LOC_Os04g53180
Os.54440.1.S1_at--745--5331Chr04:31447261..31447285 (25 bp)
GAAGTAGTAGCTAATGCCTCCCTGC
LOC_Os04g53180
Os.54440.1.S1_at--458--4831Chr04:31447238..31447262 (25 bp)
GCTCATGGCAGCTATGTACTTGCTA
LOC_Os04g53180
Os.54440.1.S1_at--71--5691Chr04:31447158..31447182 (25 bp)
GACTTTTACTATGATCTCTACTTTG
LOC_Os04g53180
Target Sequence 
AGCTGTCGGCGAGCTACGCGCTGCTCCGTGGCGTCGCCGCGGCCGCCGCCGCCGTGGCGCCAGCGCCGCCTCCTCCTCCT
CGCAATGTGATGGTCGGCAGCAGCTGCAGCTCGTTGGTCCTGGTGCGCCGCGCCGAGGCCAAGGAGAAGCGGTGCGTCGT
CGTCGTCGTCGGGAGCTCCGCCGCCTCCGCCGCCATCGTCCACGGCGAGAAGCGGCTCCACCTCGCCGCCGCTCCGGCGT
CCGAAGCAGCAGCGTGCTCCGAGATCGGCGCGTAAATATATTCGATCCGCATATATATACAGTGATGCTCTCGTTGTGGT
TTTAAACGAAGAACGAAACGTGTCATACTACTACGTCCTTTCCCATATATAATTTTGAGCTAACCAACGTAAAAAAAAAA
AGAAAGAAAGAAAGAAAAGGAAGTAGTAGCTAATGCCTCCCTGCTCATGGCAGCTATGTACTTGCTAGCTAATAAAATGG
TAATCGTTTTATATTATGTATCTATATGTTAGATATATCGATGACTTTTACTATGATCTCTACTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54440.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis