Browse Element(s) Details


Os.28071.1.S1_at

Description gb:AK067276.1
DB_XREF= gi:32977294
TID=Os.28071.1
CNT=35
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28071 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097L22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097L22, full insert sequence.
FL= gb:AK067276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5317011/11Bromodomain containing protein, expressed
LOC_Os04g531301/11Bromodomain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53120Os.57563.1.S1_s_at3/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120OsAffx.26587.1.S1_x_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120Os.57563.1.S1_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53130OsAffx.26585.1.S1_s_at8/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.46481.2.S1_x_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.28071.1.S1_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53140OsAffx.26586.1.S1_at11/114+31431458..31431901hypothetical protein
LOC_Os04g53150NANA4+31433800..31435434hypothetical protein
LOC_Os04g53160OsAffx.26587.1.S1_x_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53160Os.57563.1.S1_s_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53170Os.28071.1.S1_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53170OsAffx.26585.1.S1_s_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53180Os.54440.1.S1_at11/114+31447144..31447965expressed protein
LOC_Os04g53190Os.15210.2.S1_x_at11/114+31450157..31455532FAD binding domain containing protein, expressed
LOC_Os04g53200Os.10836.1.S1_a_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.1.S1_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.2.S1_at10/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53210Os.6585.1.S1_at11/114+31469654..31473439expressed protein
LOC_Os04g53210Os.42814.1.S1_x_at1/114+31469654..31473439expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28071.1.S1_at--624--7452Chr04:31444737..31444761 (25 bp)
GTGTCTCAGAATCTGGCAATGCCCA
LOC_Os04g53170
Os.28071.1.S1_at--1113--7432Chr04:31444705..31444729 (25 bp)
GTGTAAGGCCTCCATTCTAACAGTA
LOC_Os04g53170
Os.28071.1.S1_at--542--8832Chr04:31444522..31444546 (25 bp)
TGATAGCGCAGGTGTCCTATGTACA
LOC_Os04g53170
Os.28071.1.S1_at--550--9673Chr04:31444450..31444474 (25 bp)
TCACCAGGCTTTCTGATCTGAAGAA
LOC_Os04g53170
Os.28071.1.S1_at--292--3112Chr04:31444422..31444446 (25 bp)
AATATGGTTCATGTGGCTGTCTGTT
LOC_Os04g53170
Os.28071.1.S1_at--170--3892Chr04:31444406..31444430 (25 bp)
CTGTCTGTTCTTCTAGTTCTCAATG
LOC_Os04g53170
Os.28071.1.S1_at--272--6732Chr04:31444391..31444415 (25 bp)
GTTCTCAATGCAGTTGTTTTGTTAC
LOC_Os04g53170
Os.28071.1.S1_at--533--6772Chr04:31444371..31444395 (25 bp)
GTTACAACTGTCATATACTCTTAAT
LOC_Os04g53170
Os.28071.1.S1_at--110--451Chr04:31444279..31444303 (25 bp)
ATCTTTTCTGGGAGCTGTCTTGATT
LOC_Os04g53170
Os.28071.1.S1_at--109--6611Chr04:31444258..31444282 (25 bp)
GATTGTAGTGTTTCAGTGCTGTTGC
LOC_Os04g53170
Os.28071.1.S1_at--607--7311Chr04:31444243..31444267 (25 bp)
GTGCTGTTGCTCCATGCTGGCAAAA
LOC_Os04g53170
Target Sequence 
GTGTCTCAGAATCTGGCAATGCCCATTCTCTGGTGTAAGGCCTCCATTCTAACAGTAGGATACGAGTAGGTGGATGATTA
ATTTCCTTTTGTGTGATTGGTGGTGTAGAGACACCAAAAGTGTAGGTGTTTTGTAAGTTGATTAAGAGGAGTTGGTATCT
GTTTGGATTTAGTCAAGATTAATTTGTAGCGAGTGAACTGGCTTTGTGGCTATTCTGATAGCGCAGGTGTCCTATGTACA
TATAAGTGAAAAATGGAGACTACGGTAGCAATTGGTAGACTGGTAGTTCACCAGGCTTTCTGATCTGAAGAAGTGAATAT
GGTTCATGTGGCTGTCTGTTCTTCTAGTTCTCAATGCAGTTGTTTTGTTACAACTGTCATATACTCTTAATACTCTTACG
TAATTTGATGTGTCATTATGGGTGATTGTAACTGTGGCAANNGAAGTAGCAACATATAATCTTTTCTGGGAGCTGTCTTG
ATTGTAGTGTTTCAGTGCTGTTGCTCCATGCTGGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28071.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis