Browse Element(s) Details


Os.15210.2.S1_x_at

Description gb:CB618007
DB_XREF= gi:29612994
DB_XREF=OSIIEa01J07.r
CLONE=OSIIEa01J07
TID=Os.15210.2
CNT=27
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.15210 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013168B07, full insert sequence
FL= gb:AK061831.1 gb:AK068767.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5319011/11FAD binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53120Os.57563.1.S1_s_at3/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120OsAffx.26587.1.S1_x_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120Os.57563.1.S1_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53130OsAffx.26585.1.S1_s_at8/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.46481.2.S1_x_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.28071.1.S1_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53140OsAffx.26586.1.S1_at11/114+31431458..31431901hypothetical protein
LOC_Os04g53150NANA4+31433800..31435434hypothetical protein
LOC_Os04g53160OsAffx.26587.1.S1_x_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53160Os.57563.1.S1_s_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53170Os.28071.1.S1_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53170OsAffx.26585.1.S1_s_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53180Os.54440.1.S1_at11/114+31447144..31447965expressed protein
LOC_Os04g53190Os.15210.2.S1_x_at11/114+31450157..31455532FAD binding domain containing protein, expressed
LOC_Os04g53200Os.10836.1.S1_a_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.1.S1_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.2.S1_at10/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53210Os.6585.1.S1_at11/114+31469654..31473439expressed protein
LOC_Os04g53210Os.42814.1.S1_x_at1/114+31469654..31473439expressed protein
LOC_Os04g53220Os.4147.1.S1_at11/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_x_at8/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed
LOC_Os04g53220OsAffx.26588.1.S1_at6/114+31478225..31481224Signal recognition particle 14 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008131molecular_functionamine oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15210.2.S1_x_at--273--1211Chr04:31451098..31451122 (25 bp)
AGTTTCATCCACCACATATGGCTGC
LOC_Os04g53190
Os.15210.2.S1_x_at--855--271Chr04:31451083..31451107 (25 bp)
ATATGGCTGCAGCTATTTCCTCAAC
LOC_Os04g53190
Os.15210.2.S1_x_at--868--8451Chr04:31451044..31451068 (25 bp)
TGGCCATCCTGTTCTAGTTTACATG
LOC_Os04g53190
Os.15210.2.S1_x_at--848--9171Chr04:31450835..31450948 (25 bp)
TGCCGAGCCGATACATTACCTAGTG
LOC_Os04g53190
Os.15210.2.S1_x_at--171--5231Chr04:31450790..31450814 (25 bp)
GAATACACTTGGATCCTACACCTTC
LOC_Os04g53190
Os.15210.2.S1_x_at--185--8651Chr04:31450758..31450782 (25 bp)
TGGGCAAACCTCGTGACCTGTATGA
LOC_Os04g53190
Os.15210.2.S1_x_at--869--531Chr04:31450723..31450747 (25 bp)
ATCCCAGTCGATAACCTATTCTTTG
LOC_Os04g53190
Os.15210.2.S1_x_at--28--8071Chr04:31450696..31450720 (25 bp)
GGAGAAGCCACCAGTGTCCAGTACA
LOC_Os04g53190
Os.15210.2.S1_x_at--948--9491Chr04:31450650..31450674 (25 bp)
TCTCCACTGGTCTGATGGCAGCTGA
LOC_Os04g53190
Os.15210.2.S1_x_at--419--5671Chr04:31450585..31450609 (25 bp)
GACATGCTGGAGATGTGCCACCCTG
LOC_Os04g53190
Os.15210.2.S1_x_at--439--291Chr04:31450479..31450503 (25 bp)
ATAGTCTTCTAAGGCCATTTGGCAC
LOC_Os04g53190
Target Sequence 
AGTTTCATCCACCACATATGGCTGCAGCTATTTCCTCAACCTCCACAAGGCTACTGGCCATCCTGTTCTAGTTTACATGC
CTGCGGGTCGGCTTGCATGTGACATTGAAAAGCTGTCAGATGAGGCTGCTGCCCAATTTGCCTTCTCTCAGCTGAAGAAG
ATCCTGCCCAACGCTGCCGAGCCGATACATTACCTAGTGTCACATTGGGGCTCAGACGAGAATACACTTGGATCCTACAC
CTTCGATGGGGTGGGCAAACCTCGTGACCTGTATGAGAAGCTGCGGATCCCAGTCGATAACCTATTCTTTGCTGGAGAAG
CCACCAGTGTCCAGTACACTGGCACGGTGCATGGCGCCTTCTCCACTGGTCTGATGGCAGCTGAGGAGTGCCGAATGAGG
GTTCTTGAGCGGTTCAGGGAGCTGGACATGCTGGAGATGTGCCACCCTGCAATGGGGGAGCAGACCGCCACTGTCTCAGT
CCCACTGCTCATCTCCCGGCTGTGAACAGACCAGGAGCTGCACAAAAATTATAGTCTTCTAAGGCCATTTGGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15210.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis