Browse Element(s) Details


Os.57563.1.S1_at

Description gb:AB002266.1
DB_XREF= gi:2943741
TID=Os.57563.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57563 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for XA1, complete cds.
PROD=XA1
FL= gb:AB002266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g531202/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53080OsAffx.26586.1.S1_at8/114+31394274..31394633hypothetical protein
LOC_Os04g53090Os.38395.3.S1_x_at11/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.2.S1_x_at9/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.4.S1_x_at5/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.1.S1_at1/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53110OsAffx.14392.1.S1_at10/114+31410130..31414368hypothetical protein
LOC_Os04g53110Os.52574.2.S1_x_at1/114+31410130..31414368hypothetical protein
LOC_Os04g53110OsAffx.28164.2.S1_at1/114+31410130..31414368hypothetical protein
LOC_Os04g53120Os.57563.1.S1_s_at3/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120OsAffx.26587.1.S1_x_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120Os.57563.1.S1_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53130OsAffx.26585.1.S1_s_at8/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.46481.2.S1_x_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.28071.1.S1_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53140OsAffx.26586.1.S1_at11/114+31431458..31431901hypothetical protein
LOC_Os04g53150NANA4+31433800..31435434hypothetical protein
LOC_Os04g53160OsAffx.26587.1.S1_x_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53160Os.57563.1.S1_s_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53170Os.28071.1.S1_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53170OsAffx.26585.1.S1_s_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53180Os.54440.1.S1_at11/114+31447144..31447965expressed protein
LOC_Os04g53190Os.15210.2.S1_x_at11/114+31450157..31455532FAD binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57563.1.S1_at--970--2751NONE
AAGAGGTTGGAGATCCGGAGTTGCA
NONE
Os.57563.1.S1_at--1024--4271NONE
CCTTCGTTCGAAGAACTGGATATCA
NONE
Os.57563.1.S1_at--433--10631NONE
TTCGAAGAACTGGATATCATCGCTT
NONE
Os.57563.1.S1_at--306--251NONE
ATATCATCGCTTGCAGTAATGAGCT
NONE
Os.57563.1.S1_at--440--531Chr04:31425242..31425320 (25 bp)
ATCGCTTGCAGTAATGAGCTAGCTC
LOC_Os04g53120
Os.57563.1.S1_at--16--3011Chr04:31425308..31425331 (24 bp)
AATGAGCTAGCTCAGCAGTGCAGAA
LOC_Os04g53120
Os.57563.1.S1_at--637--5471NONE
GAACTCTAGCAAGCACTCTGAAGGT
NONE
Os.57563.1.S1_at--483--2011NONE
ACTCTAGCAAGCACTCTGAAGGTCA
NONE
Os.57563.1.S1_at--161--3231NONE
CAAGCACTCTGAAGGTCAAAATTAA
NONE
Os.57563.1.S1_at--455--3031Chr04:31443618..31443642 (25 bp)
AATCGACCGGCAAAACCAATCCGCT
NONE
Os.57563.1.S1_at--162--4391Chr04:31443633..31443657 (25 bp)
CCAATCCGCTCCAATGCATTGTCAC
NONE
Target Sequence 
AAGAGGTTGGAGATCCGGAGTTGCAGGAGCATCGCGAGGCTGCCGGAGAAGGGCCTCCCACCTTCGTTCGAAGAACTGGA
TATCATCGCTTGCAGTAATGAGCTAGCTCAGCAGTGCAGAACTCTAGCAAGCACTCTGAAGGTCAAAATTAATGGGGGAT
ATGTGAACTGATTACTCGGTGGCTTGTTAGGCGCACCTTTTTCCACCTGCCCAACTGGCATGGGCTCGTTCAGGCGTTCA
AGCTGCTGTAAATTCCATTGCCGCAATGACGACCTTCAGAACCGTTACACAATACAAAGGACATATGATGGCTAGATCAA
CTGTCGCAGAGCTAGCTTTGGTTCACCTGAAAACATAAGGCCAAACGCGTGGTTCTTTTAATCAGAAGTATCAAAAATTG
GTTTTGGTTTTTAACGAAAAGATGTTAGAAATTGGTTTTAATGTGCCAGATTCTGTACCAGAATTCTGTATTTTGCTCCG
TAATTCTGTGCTACGACTGATGTTGTATTTAACTGATAGCAATCGACCGGCAAAACCAATCCGCTCCAATGCATTGTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57563.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis