Browse Element(s) Details


OsAffx.14392.1.S1_at

Description tigr:9632.m05150
TID=OsAffx.14392.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5311010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53050OsAffx.30177.1.S1_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050OsAffx.30177.1.S1_x_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050Os.37971.1.A1_at1/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53060OsAffx.14390.1.S1_at11/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53060OsAffx.26587.1.S1_x_at2/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53070OsAffx.26585.1.S1_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070OsAffx.26585.1.S1_s_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070Os.55000.1.S1_x_at1/114+31390439..31391773hypothetical protein
LOC_Os04g53080OsAffx.26586.1.S1_at8/114+31394274..31394633hypothetical protein
LOC_Os04g53090Os.38395.3.S1_x_at11/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.2.S1_x_at9/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.4.S1_x_at5/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.1.S1_at1/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53110OsAffx.14392.1.S1_at10/114+31410130..31414368hypothetical protein
LOC_Os04g53110Os.52574.2.S1_x_at1/114+31410130..31414368hypothetical protein
LOC_Os04g53110OsAffx.28164.2.S1_at1/114+31410130..31414368hypothetical protein
LOC_Os04g53120Os.57563.1.S1_s_at3/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120OsAffx.26587.1.S1_x_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120Os.57563.1.S1_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53130OsAffx.26585.1.S1_s_at8/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.46481.2.S1_x_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.28071.1.S1_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53140OsAffx.26586.1.S1_at11/114+31431458..31431901hypothetical protein
LOC_Os04g53150NANA4+31433800..31435434hypothetical protein
LOC_Os04g53160OsAffx.26587.1.S1_x_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53160Os.57563.1.S1_s_at11/114+31437628..31443628NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14392.1.S1_at--526--9171Chr04:31410266..31410290 (25 bp)
TGCCGCCCGGTGGTTTGTTTGAGAA
LOC_Os04g53110
OsAffx.14392.1.S1_at--657--9431Chr04:31410346..31410751 (25 bp)
TCGGGCTTGTACTGCTCTATTGATC
LOC_Os04g53110
OsAffx.14392.1.S1_at--962--3351Chr04:31410782..31410806 (25 bp)
CACCCGGCTGTTTATTTGAAGAGGC
LOC_Os04g53110
OsAffx.14392.1.S1_at--913--6191Chr04:31410802..31411117 (25 bp)
GAGGCAACCACGATGCAGTTGTGCT
LOC_Os04g53110
OsAffx.14392.1.S1_at--788--9051Chr04:31411117..31411141 (25 bp)
TGCATGGATCAGCTTTTGACACAAA
LOC_Os04g53110
OsAffx.14392.1.S1_at--938--3091NONE
AATACTGGATCGGAGCTACACAAAA
NONE
OsAffx.14392.1.S1_at--133--2411Chr04:31413678..31413702 (25 bp)
AAACATGGATCTGCCTGAGTTCCTC
LOC_Os04g53110
OsAffx.14392.1.S1_at--378--5891Chr04:31413825..31413847 (23 bp)
GAGCGGAGTCTTCGGCAACCATGAC
LOC_Os04g53110
OsAffx.14392.1.S1_at--911--2631Chr04:31413841..31414279 (25 bp)
AACCATGACGATCGCAGTTCTGACA
LOC_Os04g53110
OsAffx.14392.1.S1_at--481--1231Chr04:31414270..31414294 (25 bp)
AGTTCTGACATGTGCTTACGCTGCC
LOC_Os04g53110
OsAffx.14392.1.S1_at--180--10671Chr04:31414305..31414329 (25 bp)
TTCCGATAGCGCTGCACATATTTGC
LOC_Os04g53110
Target Sequence 
TGCCGCCCGGTGGTTTGTTTGAGAACCACGGCAAGGGGCCTTCTTCCTCTACTACGGCATTCTCATCGCGGTGGCCGTCT
TCGGGCTTGTACTGCTCTATTGATCCCGCACAAAATAATAGCCGAACTGAGAAAACACCCGGCTGTTTATTTGAAGAGGC
AACCACGATGCAGTTGTGCTGCATGGATCAGCTTTTGACACAAAATACTGGATCGGAGCTACACAAAAACATGGATCTGC
CTGAGTTCCTCGCCAAGATCCTGCAGGCGATCGCGGACGCCTGCCTCGACGACAACAAGCTTCCCGGGGCGCTTATCTCG
TGCGGCGTCCTCCAAGCCGCGGCTGCACTCTCCCTCGTCTTCTTCATCGCTCCGAGCGGAGTCTTCGGCAACCATGACGA
TCGCAGTTCTGACATGTGCTTACGCTGCCTCTATTCTACTTCCGATAGCGCTGCACATATTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis