Browse Element(s) Details


Os.57563.1.S1_s_at

Description gb:AB002266.1
DB_XREF= gi:2943741
TID=Os.57563.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57563 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for XA1, complete cds.
PROD=XA1
FL= gb:AB002266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5316011/11NB-ARC domain containing protein, expressed
LOC_Os04g531203/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53110OsAffx.14392.1.S1_at10/114+31410130..31414368hypothetical protein
LOC_Os04g53110Os.52574.2.S1_x_at1/114+31410130..31414368hypothetical protein
LOC_Os04g53110OsAffx.28164.2.S1_at1/114+31410130..31414368hypothetical protein
LOC_Os04g53120Os.57563.1.S1_s_at3/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120OsAffx.26587.1.S1_x_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120Os.57563.1.S1_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53130OsAffx.26585.1.S1_s_at8/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.46481.2.S1_x_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.28071.1.S1_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53140OsAffx.26586.1.S1_at11/114+31431458..31431901hypothetical protein
LOC_Os04g53150NANA4+31433800..31435434hypothetical protein
LOC_Os04g53160OsAffx.26587.1.S1_x_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53160Os.57563.1.S1_s_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53170Os.28071.1.S1_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53170OsAffx.26585.1.S1_s_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53180Os.54440.1.S1_at11/114+31447144..31447965expressed protein
LOC_Os04g53190Os.15210.2.S1_x_at11/114+31450157..31455532FAD binding domain containing protein, expressed
LOC_Os04g53200Os.10836.1.S1_a_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.1.S1_at11/114+31459864..31464830exonuclease family protein, expressed
LOC_Os04g53200Os.10836.2.S1_at10/114+31459864..31464830exonuclease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57563.1.S1_s_at--238--151Chr04:31443268..31443292 (25 bp)
ATTACTCGGTGGCTTGTTAGGCGCA
LOC_Os04g53160
Os.57563.1.S1_s_at--981--8632Chr04:31443318..31443342 (25 bp)
TGGGCTCGTTCAGGCGTTCAAGCTG
LOC_Os04g53160
Os.57563.1.S1_s_at--642--9112Chr04:31443341..31443365 (25 bp)
TGCTGTAAATTCCATTGCCGCAATG
LOC_Os04g53160
Os.57563.1.S1_s_at--913--72Chr04:31443354..31443378 (25 bp)
ATTGCCGCAATGACGACCTTCAGAA
LOC_Os04g53160
Os.57563.1.S1_s_at--854--6231Chr04:31443404..31443428 (25 bp)
GATGGCTAGATCAACTGTCGCAGAG
LOC_Os04g53160
Os.57563.1.S1_s_at--111--5051Chr04:31443423..31443447 (25 bp)
GCAGAGCTAGCTTTGGTTCACCTGA
LOC_Os04g53160
Os.57563.1.S1_s_at--747--3251Chr04:31443459..31443483 (25 bp)
CAAACGCGTGGTTCTTTTAATCAGA
LOC_Os04g53160
Os.57563.1.S1_s_at--7--2991Chr04:31443537..31443561 (25 bp)
AATGTGCCAGATTCTGTACCAGAAT
LOC_Os04g53160
Os.57563.1.S1_s_at--237--1731Chr04:31443554..31443578 (25 bp)
ACCAGAATTCTGTATTTTGCTCCGT
LOC_Os04g53160
Os.57563.1.S1_s_at--1044--6871Chr04:31443565..31443589 (25 bp)
GTATTTTGCTCCGTAATTCTGTGCT
LOC_Os04g53160
Os.57563.1.S1_s_at--861--3151Chr04:31443579..31443603 (25 bp)
AATTCTGTGCTACGACTGATGTTGT
LOC_Os04g53160
Target Sequence 
ATTACTCGGTGGCTTGTTAGGCGCACCTTTTTCCACCTGCCCAACTGGCATGGGCTCGTTCAGGCGTTCAAGCTGCTGTA
AATTCCATTGCCGCAATGACGACCTTCAGAACCGTTACACAATACAAAGGACATATGATGGCTAGATCAACTGTCGCAGA
GCTAGCTTTGGTTCACCTGAAAACATAAGGCCAAACGCGTGGTTCTTTTAATCAGAAGTATCAAAAATTGGTTTTGGTTT
TTAACGAAAAGATGTTAGAAATTGGTTTTAATGTGCCAGATTCTGTACCAGAATTCTGTATTTTGCTCCGTAATTCTGTG
CTACGACTGATGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57563.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis