Browse Element(s) Details


OsAffx.26586.1.S1_at

Description tigr:9632.m05153
TID=OsAffx.26586.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5314011/11hypothetical protein
LOC_Os04g530808/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53110OsAffx.14392.1.S1_at10/114+31410130..31414368hypothetical protein
LOC_Os04g53110Os.52574.2.S1_x_at1/114+31410130..31414368hypothetical protein
LOC_Os04g53110OsAffx.28164.2.S1_at1/114+31410130..31414368hypothetical protein
LOC_Os04g53120Os.57563.1.S1_s_at3/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120OsAffx.26587.1.S1_x_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53120Os.57563.1.S1_at2/114+31419036..31425732NB-ARC domain containing protein, expressed
LOC_Os04g53130OsAffx.26585.1.S1_s_at8/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.46481.2.S1_x_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53130Os.28071.1.S1_at1/114+31426601..31430027Bromodomain containing protein
LOC_Os04g53140OsAffx.26586.1.S1_at11/114+31431458..31431901hypothetical protein
LOC_Os04g53150NANA4+31433800..31435434hypothetical protein
LOC_Os04g53160OsAffx.26587.1.S1_x_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53160Os.57563.1.S1_s_at11/114+31437628..31443628NB-ARC domain containing protein, expressed
LOC_Os04g53170Os.28071.1.S1_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53170OsAffx.26585.1.S1_s_at11/114+31444201..31446347Bromodomain containing protein, expressed
LOC_Os04g53180Os.54440.1.S1_at11/114+31447144..31447965expressed protein
LOC_Os04g53190Os.15210.2.S1_x_at11/114+31450157..31455532FAD binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26586.1.S1_at--1074--4891Chr04:31431494..31431518 (25 bp)
GCTTACATCGAATCACCATCCACGA
LOC_Os04g53140
OsAffx.26586.1.S1_at--153--5251Chr04:31431503..31431527 (25 bp)
GAATCACCATCCACGACAAAGAAGA
LOC_Os04g53140
OsAffx.26586.1.S1_at--91--2751Chr04:31431521..31431545 (25 bp)
AAGAAGACGCATACGCTGGTGATGG
LOC_Os04g53140
OsAffx.26586.1.S1_at--442--2512Chr04:31431566..31431590 (25 bp)
AACATCTTGGCGCTGATCTCCGAGG
LOC_Os04g53140
OsAffx.26586.1.S1_at--824--9592Chr04:31431570..31431594 (25 bp)
TCTTGGCGCTGATCTCCGAGGCATG
LOC_Os04g53140
OsAffx.26586.1.S1_at--735--452Chr04:31431581..31431605 (25 bp)
ATCTCCGAGGCATGCCGCAGCGCGG
LOC_Os04g53140
OsAffx.26586.1.S1_at--657--8392Chr04:31431619..31431643 (25 bp)
GGCGCTGATCACTGGCGGCGTCGTG
LOC_Os04g53140
OsAffx.26586.1.S1_at--860--4652Chr04:31431773..31431797 (25 bp)
GCGTGGGCCGGGTTCTGGGTCTCCG
LOC_Os04g53140
OsAffx.26586.1.S1_at--963--8392Chr04:31431813..31431837 (25 bp)
GGCGCGCCGTCGGAAAGACGATACT
LOC_Os04g53140
OsAffx.26586.1.S1_at--973--2752Chr04:31431827..31431851 (25 bp)
AAGACGATACTGTGGGTGTCGATTT
LOC_Os04g53140
OsAffx.26586.1.S1_at--807--312Chr04:31431833..31431857 (25 bp)
ATACTGTGGGTGTCGATTTTGCCTC
LOC_Os04g53140
Target Sequence 
GCTTACATCGAATCACCATCCACGACAAAGAAGACGCATACGCTGGTGATGGAGNTCATGGCNTCCCTCNTCAACATCTT
GGCGCTGATCTCCGAGGCATGCCGCAGCGCGGAGAAGCTGCCGGCGGCGCTGATCACTGGCGGCGTCGTGGAGGCCGCGG
CGGCGATCTTCGTCGNNNTNTTCAAGNCGCCCGGNGGCNTATTTCANCACCACGGCAAGGCNCCATTCTACCTNTATTAC
GGCATNANAGGAGGCGTGGCCATCTTCGGCTTCGCGGAGGCGTGGGCCGGGTTCTGGGTCTCCGGCGACCTNAACGGCCG
GCGCGCCGTCGGAAAGACGATACTGTGGGTGTCGATTTTGCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26586.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis