Browse Element(s) Details


OsAffx.14390.1.S1_at

Description tigr:9632.m05145
TID=OsAffx.14390.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5306011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53030OsAffx.14389.1.S1_at11/114+31358821..31364811NB-ARC domain containing protein, expressed
LOC_Os04g53040Os.51599.2.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.1.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.2.A1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040OsAffx.18229.1.S1_x_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.53813.1.S1_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53050OsAffx.30177.1.S1_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050OsAffx.30177.1.S1_x_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050Os.37971.1.A1_at1/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53060OsAffx.14390.1.S1_at11/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53060OsAffx.26587.1.S1_x_at2/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53070OsAffx.26585.1.S1_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070OsAffx.26585.1.S1_s_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070Os.55000.1.S1_x_at1/114+31390439..31391773hypothetical protein
LOC_Os04g53080OsAffx.26586.1.S1_at8/114+31394274..31394633hypothetical protein
LOC_Os04g53090Os.38395.3.S1_x_at11/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.2.S1_x_at9/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.4.S1_x_at5/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.1.S1_at1/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53110OsAffx.14392.1.S1_at10/114+31410130..31414368hypothetical protein
LOC_Os04g53110Os.52574.2.S1_x_at1/114+31410130..31414368hypothetical protein
LOC_Os04g53110OsAffx.28164.2.S1_at1/114+31410130..31414368hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14390.1.S1_at--968--1431Chr04:31387704..31387728 (25 bp)
AGAACTGATGTCATGCACTGCACTC
LOC_Os04g53060
OsAffx.14390.1.S1_at--674--4971Chr04:31387753..31387777 (25 bp)
GCATCGCTTGCTACATTAGTGGGCT
LOC_Os04g53060
OsAffx.14390.1.S1_at--230--4311Chr04:31387822..31387846 (25 bp)
CCTAGCTTGCCTCTATGTTTGGAGA
LOC_Os04g53060
OsAffx.14390.1.S1_at--602--10111Chr04:31387871..31387895 (25 bp)
TATGCCCTCGATTGGAAAGGCTCCA
LOC_Os04g53060
OsAffx.14390.1.S1_at--978--5571Chr04:31387885..31387909 (25 bp)
GAAAGGCTCCAGATCGATGACCTCT
LOC_Os04g53060
OsAffx.14390.1.S1_at--448--9631Chr04:31387945..31387969 (25 bp)
TCAGTCCAATTCCTAGAGCTTTACG
LOC_Os04g53060
OsAffx.14390.1.S1_at--569--8051Chr04:31387969..31387993 (25 bp)
GGAGATCCATACCTTTACATTCGTG
LOC_Os04g53060
OsAffx.14390.1.S1_at--483--3991Chr04:31388048..31388072 (25 bp)
CGTCCTTGCAAGAGCTCCAATTCAA
LOC_Os04g53060
OsAffx.14390.1.S1_at--1006--3511Chr04:31388077..31388101 (25 bp)
CATGACAGTCTTGTAGATCTTCCTA
LOC_Os04g53060
OsAffx.14390.1.S1_at--147--1271Chr04:31388091..31388115 (25 bp)
AGATCTTCCTACAGGGCTGCATAAC
LOC_Os04g53060
OsAffx.14390.1.S1_at--926--2771Chr04:31388225..31388249 (25 bp)
AAGAGCTAGCTGACCATTGCAGAAT
LOC_Os04g53060
Target Sequence 
AGAACTGATGTCATGCACTGCACTCGAACATTTGAAGATTGAAGGTTGTGCATCGCTTGCTACATTAGTGGGCTTGCAAT
CCCTCCACAGCCTCAGGCATTTGGAAGTATTTAGATGCCCTAGCTTGCCTCTATGTTTGGAGAGTTTGTCAGGGCAGGGC
TATGAGCTATGCCCTCGATTGGAAAGGCTCCAGATCGATGACCTCTCTATCCTTACTACGTCGCTCTGCCAGCACCTCAT
CTCAGTCCAATTCCTAGAGCTTTACGGAGATCCATACCTTTACATTCGTGGAGTCGAAGTGGCAAGACTAACGGATGAGC
AAGAGAGAGCGCTTCAGCTCCTCACGTCCTTGCAAGAGCTCCAATTCAAGTCTCATGACAGTCTTGTAGATCTTCCTACA
GGGCTGCATAACCTTCCTTCCCTCAAGAGGTTGAAGATCGATAATTGCAAGAGCATCATGAGGCTGCCAGAGAAGGGTCT
CCCACCTTCGTTGGAAGAATTGCATATCAGCAATTGCAGCAAAGAGCTAGCTGACCATTGCAGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis