Browse Element(s) Details


Os.25265.1.S1_at

Description gb:CB630708
DB_XREF= gi:29625697
DB_XREF=OSIIEb07M20.f
CLONE=OSIIEb07M20
TID=Os.25265.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.25265 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188065.1 (A.thaliana) disease resistance protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5304011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52990Os.51611.1.S1_at11/114+31343331..31343904expressed protein
LOC_Os04g53000OsAffx.14387.3.S1_at11/114+31346084..31347211Leucine Rich Repeat family protein, expressed
LOC_Os04g53010Os.14919.1.S1_at4/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53010OsAffx.29313.1.S1_at1/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53020NANA4+31356564..31357381GRF zinc finger family protein
LOC_Os04g53030OsAffx.14389.1.S1_at11/114+31358821..31364811NB-ARC domain containing protein, expressed
LOC_Os04g53040Os.51599.2.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.1.S1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.25265.2.A1_at11/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040OsAffx.18229.1.S1_x_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53040Os.53813.1.S1_at1/114+31367525..31378723retrotransposon protein, putative, unclassified, expressed
LOC_Os04g53050OsAffx.30177.1.S1_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050OsAffx.30177.1.S1_x_at11/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53050Os.37971.1.A1_at1/114+31381060..31385140NB-ARC domain containing protein
LOC_Os04g53060OsAffx.14390.1.S1_at11/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53060OsAffx.26587.1.S1_x_at2/114+31386340..31388283Leucine Rich Repeat family protein
LOC_Os04g53070OsAffx.26585.1.S1_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070OsAffx.26585.1.S1_s_at11/114+31390439..31391773hypothetical protein
LOC_Os04g53070Os.55000.1.S1_x_at1/114+31390439..31391773hypothetical protein
LOC_Os04g53080OsAffx.26586.1.S1_at8/114+31394274..31394633hypothetical protein
LOC_Os04g53090Os.38395.3.S1_x_at11/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.2.S1_x_at9/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.4.S1_x_at5/114+31398348..31404275SWIM zinc finger family protein
LOC_Os04g53090Os.38395.1.S1_at1/114+31398348..31404275SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25265.1.S1_at--738--5271Chr04:31367888..31367912 (25 bp)
GAATGAGCCGATGGCTGGGTCTCTT
LOC_Os04g53040
Os.25265.1.S1_at--706--8631Chr04:31367903..31367927 (25 bp)
TGGGTCTCTTCTCCATCTGAAAGAC
LOC_Os04g53040
Os.25265.1.S1_at--1078--5551Chr04:31367921..31367945 (25 bp)
GAAAGACCTGCTGTACGACGCGGAT
LOC_Os04g53040
Os.25265.1.S1_at--233--1871Chr04:31367935..31367959 (25 bp)
ACGACGCGGATGACGTGCTGGACAA
LOC_Os04g53040
Os.25265.1.S1_at--323--2691Chr04:31367958..31367982 (25 bp)
AAGCTCGACTACTGTCGTCTTCAAG
LOC_Os04g53040
Os.25265.1.S1_at--382--1751Chr04:31369176..31369200 (25 bp)
ACCTACTTCATCTTTCTTTTCTATT
LOC_Os04g53040
Os.25265.1.S1_at--882--10471Chr04:31369199..31369223 (25 bp)
TTAACAGATGGTTCACCGTCACCGG
LOC_Os04g53040
Os.25265.1.S1_at--775--351Chr04:31369265..31369289 (25 bp)
ATAAGCGCCAGTTTTCTGCAACGAT
LOC_Os04g53040
Os.25265.1.S1_at--849--7491Chr04:31369322..31369346 (25 bp)
GTGGTGATGTCAGCAAGGGTCTCAA
LOC_Os04g53040
Os.25265.1.S1_at--805--8891Chr04:31369382..31369406 (25 bp)
TGAGTCATCGGAGTACAGCCCGGGC
LOC_Os04g53040
Os.25265.1.S1_at--976--3251Chr04:31369421..31369445 (25 bp)
CAACGTCTTATGTTCTTGAGCCCAT
LOC_Os04g53040
Target Sequence 
GAATGAGCCGATGGCTGGGTCTCTTCTCCATCTGAAAGACCTGCTGTACGACGCGGATGACGTGCTGGACAAGCTCGACT
ACTGTCGTCTTCAAGAACAGATCATAAAAGGCAACAGCGAGGATGTTAAATCTACACCTACTTCATCTTTCTTTTCTATT
AACAGATGGTTCACCGTCACCGGCTGGAAAAGGAAAAGAGAAGAAAACCACACACTCCTTGATAATAAGCGCCAGTTTTC
TGCAACGATAAAACAAATTGCTGGAAAACTACGAGATGCTCGTGGTGATGTCAGCAAGGGTCTCAAGATAAACGGATTAA
AGTCTCCTGAAGCTTCAAATCTGAGTCATCGGAGTACAGCCCGGGCCACAAATGCAACAACAACGTCTTATGTTCTTGAG
CCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25265.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis