Browse Element(s) Details


Os.20783.1.S1_a_at

Description gb:AK060979.1
DB_XREF= gi:32970997
TID=Os.20783.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20783 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033035I12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-G05, full insert sequence.
FL= gb:AK060979.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5177011/11TLD family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51720OsAffx.12598.1.S1_at11/112+31677677..31678615hypothetical protein
LOC_Os02g51730Os.18041.1.S1_at11/112+31680311..31684415TPR Domain containing protein, expressed
LOC_Os02g51740Os.51369.1.S1_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51740OsAffx.12599.1.S1_s_at11/112+31688258..31691509VQ motif family protein, expressed
LOC_Os02g51750Os.11915.1.S1_at11/112+31692292..31694577Annexin-like protein RJ4, putative, expressed
LOC_Os02g51760OsAffx.12600.1.S1_at11/112+31698319..31701523expressed protein
LOC_Os02g51770Os.20783.1.S1_a_at11/112+31701789..31705122TLD family protein, expressed
LOC_Os02g51780Os.9483.1.S1_at11/112+31705484..31710525RNB-like protein, expressed
LOC_Os02g51790Os.5206.1.S2_at11/112+31713856..3171663050S ribosomal protein L29, chloroplast precursor, putative, expressed
LOC_Os02g51790Os.5206.1.S1_at10/112+31713856..3171663050S ribosomal protein L29, chloroplast precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20783.1.S1_a_at--741--5191Chr02:31704036..31704060 (25 bp)
GCAATAGCTGCTTTGTTTTCACTAA
LOC_Os02g51770
Os.20783.1.S1_a_at--88--9251Chr02:31704073..31704097 (25 bp)
TCCTAGTATATATCGACCGACTGGT
LOC_Os02g51770
Os.20783.1.S1_a_at--226--10211Chr02:31704387..31704411 (25 bp)
TATTTCACAGTGTGCTCCACCGACT
LOC_Os02g51770
Os.20783.1.S1_a_at--641--4771Chr02:31704400..31704424 (25 bp)
GCTCCACCGACTATTTGGCATTAGG
LOC_Os02g51770
Os.20783.1.S1_a_at--303--8551Chr02:31704428..31704452 (25 bp)
TGGAGGTCATTTCGCACTTTATCTA
LOC_Os02g51770
Os.20783.1.S1_a_at--633--5111Chr02:31704441..31704465 (25 bp)
GCACTTTATCTAGATGCCGACCTGT
LOC_Os02g51770
Os.20783.1.S1_a_at--632--9591Chr02:31704623..31704647 (25 bp)
TCATTCCCCAGACTTCGCGGTAAAA
LOC_Os02g51770
Os.20783.1.S1_a_at--462--7871Chr02:31704747..31704771 (25 bp)
GGTTTCGTCTATCCTTCCAAGTACG
LOC_Os02g51770
Os.20783.1.S1_a_at--580--611Chr02:31704959..31704983 (25 bp)
ATGCGAGCTTGCTCAGAGCTGTACA
LOC_Os02g51770
Os.20783.1.S1_a_at--519--9911Chr02:31705002..31705026 (25 bp)
TACTGTTAGCGAAACATGGACGCGC
LOC_Os02g51770
Os.20783.1.S1_a_at--215--851Chr02:31705017..31705041 (25 bp)
ATGGACGCGCTGGTTATTTGTTTCA
LOC_Os02g51770
Target Sequence 
GCAATAGCTGCTTTGTTTTCACTAATTTACACAGCAATCCTAGTATATATCGACCGACTGGTGCTAATAACTATTTCACA
GTGTGCTCCACCGACTATTTGGCATTAGGAGGTGGAGGTCATTTCGCACTTTATCTAGATGCCGACCTGTTGAGTGGTTC
AAGTTCCAATTCAGAGACTTTTAACAACATGTGTTTATCTCATTCCCCAGACTTCGCGGTAAAAGATGTCGAGCTGTGGG
GTTTCGTCTATCCTTCCAAGTACGATGAGACGCTCGCCCTCTGCCGTACTGAGAAACCAGGAATTTGCCGGTGGTGATTT
GGTGGTCCTTGAAGGCTTGAATTGTGCTGAATCTGCGAATGATGCATCTGTACAGTTTTTCGTAGACTTGAGAGAATTTT
AGTGCACAGGATCGTGTAGGATTGTAGGAGTGATGGAAACTTGCGTTTCTCATGCGAGCTTGCTCAGAGCTGTACATATT
TGTAATTTTCTTGCTACTGTTAGCGAAACATGGACGCGCTGGTTATTTGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20783.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis