Browse Element(s) Details


Os.20802.1.S1_at

Description gb:AK102905.1
DB_XREF= gi:32988114
TID=Os.20802.1
CNT=22
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033113F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033113F11, full insert sequence.
FL= gb:AK102905.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1674011/11Protein kinase APK1B, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16700Os.7945.2.S1_s_at11/113+9226400..9231661initiator-binding protein, putative, expressed
LOC_Os03g16709NANA3+9239122..9239870hypothetical protein
LOC_Os03g16718OsAffx.3253.1.S1_at11/113+9240323..9244394hypothetical protein
LOC_Os03g16718OsAffx.31578.4.S1_at10/113+9240323..9244394hypothetical protein
LOC_Os03g16718Os.3192.1.S1_at1/113+9240323..9244394hypothetical protein
LOC_Os03g16730Os.53240.1.A1_x_at11/113+9245130..9249712expressed protein
LOC_Os03g16730OsAffx.3254.1.S1_at8/113+9245130..9249712expressed protein
LOC_Os03g16740Os.20802.1.S1_at11/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16740Os.55715.1.S1_at1/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16750NANA3+9257616..9260219hypothetical protein
LOC_Os03g16760Os.25002.1.S1_at11/113+9264379..9267908Protein phosphatase 2C containing protein, expressed
LOC_Os03g16770OsAffx.12885.1.S1_at11/113+9272855..9274164hypothetical protein
LOC_Os03g16780Os.11179.1.S1_at11/113+9275906..9279030ankyrin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20802.1.S1_at--193--991Chr03:9249735..9249759 (25 bp)
AGGAGGGTCATCCATGTCCTCGACT
LOC_Os03g16740
Os.20802.1.S1_at--992--751Chr03:9249722..9249746 (25 bp)
ATGTCCTCGACTCACGCCTGGGATC
LOC_Os03g16740
Os.20802.1.S1_at--630--8631Chr03:9249704..9249728 (25 bp)
TGGGATCCCAGTATTCGCTTCCAGC
LOC_Os03g16740
Os.20802.1.S1_at--14--9191Chr03:9249648..9249672 (25 bp)
TGCCTGTCAATGGATGCACGATGCA
LOC_Os03g16740
Os.20802.1.S1_at--66--5011Chr03:9249617..9249641 (25 bp)
GCATGGATCAGGTTGTGACCGCGCT
LOC_Os03g16740
Os.20802.1.S1_at--1075--4711Chr03:9249595..9249619 (25 bp)
GCTGGAGCAGCTTCAAGGTGCAAAG
LOC_Os03g16740
Os.20802.1.S1_at--362--851Chr03:9249551..9249575 (25 bp)
ATGGCTGTCTGGTGTCGTCAAATGT
LOC_Os03g16740
Os.20802.1.S1_at--633--7731Chr03:9249541..9249565 (25 bp)
GGTGTCGTCAAATGTCTCCAGTAGA
LOC_Os03g16740
Os.20802.1.S1_at--663--6951Chr03:9249521..9249545 (25 bp)
GTAGACCAGTCTCTACCTCTCCTGG
LOC_Os03g16740
Os.20802.1.S1_at--71--4271Chr03:9249501..9249525 (25 bp)
CCTGGAGCATCCTGATCGTGAGACA
LOC_Os03g16740
Os.20802.1.S1_at--711--4971Chr03:9249495..9249519 (25 bp)
GCATCCTGATCGTGAGACACTTTGA
LOC_Os03g16740
Target Sequence 
AGGAGGGTCATCCATGTCCTCGACTCACGCCTGGGATCCCAGTATTCGCTTCCAGCTGCGCAGAAGATCGCGGGGCTTGC
GGTGCAGTGCCTGTCAATGGATGCACGATGCAGGCCGGGCATGGATCAGGTTGTGACCGCGCTGGAGCAGCTTCAAGGTG
CAAAGAAAGCAGCCAAGTAGAATTATGGCTGTCTGGTGTCGTCAAATGTCTCCAGTAGACCAGTCTCTACCTCTCCTGGA
GCATCCTGATCGTGAGACACTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis