Browse Element(s) Details


Os.20811.1.A1_s_at

Description gb:CB627017
DB_XREF= gi:29622006
DB_XREF=OSIIEb01K15.r
CLONE=OSIIEb01K15
TID=Os.20811.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.20811 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187219.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3534011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35330NANA3+19523407..19525077retrotransposon, putative, centromere-specific
LOC_Os03g35340OsAffx.10482.1.S1_x_at11/113+19540058..19559250expressed protein
LOC_Os03g35340Os.20811.1.A1_s_at11/113+19540058..19559250expressed protein
LOC_Os03g35340Os.20811.2.S1_s_at11/113+19540058..19559250expressed protein
LOC_Os03g35340OsAffx.10482.2.S1_at11/113+19540058..19559250expressed protein
LOC_Os03g35340OsAffx.11.1.A1_at1/113+19540058..19559250expressed protein
LOC_Os03g35350OsAffx.10483.1.S1_at11/113+19560043..19560375hypothetical protein
LOC_Os03g35360OsAffx.13187.1.S1_at11/113+19567560..19568039hypothetical protein
LOC_Os03g35370NANA3+19569548..19571275hypothetical protein
LOC_Os03g35380Os.54287.1.S1_at4/113+19571790..19575296Transposable element protein, putative, Transposase_28
LOC_Os03g35390Os.1709.1.S1_x_at9/113+19575896..19581808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35390Os.31497.2.S1_x_at1/113+19575896..19581808retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20811.1.A1_s_at--275--2912Chr03:30503653..30503675 (22 bp)
AAGGTTCTCTTCAACAACCACAAGA
NONE
Os.20811.1.A1_s_at--571--5071Chr03:19540941..19540965 (25 bp)
GCAGCCAATGCCATATCCACTAAAT
LOC_Os03g35340
Os.20811.1.A1_s_at--934--2251Chr03:19540920..19540944 (25 bp)
AAATACTATTCAGCCTCAGGTGCCA
LOC_Os03g35340
Os.20811.1.A1_s_at--595--9671Chr03:19540911..19540935 (25 bp)
TCAGCCTCAGGTGCCATTGCAGTTT
LOC_Os03g35340
Os.20811.1.A1_s_at--762--3391Chr03:19540880..19540904 (25 bp)
CAGCTTCATGTTCCACAACTACAAT
LOC_Os03g35340
Os.20811.1.A1_s_at--55--6951Chr03:19540618..19540642 (25 bp)
GTAAGCTTTTGGAGCAGAACCCCAA
LOC_Os03g35340
Os.20811.1.A1_s_at--120--1431Chr03:19540603..19540627 (25 bp)
AGAACCCCAAACTCATGCAGATGCT
LOC_Os03g35340
Os.20811.1.A1_s_at--1049--3651Chr03:19540419..19540440 (22 bp)
CTTCAGGATCGTATTGGCCAGCTAT
LOC_Os03g35340
Os.20811.1.A1_s_at--940--4251Chr03:19540377..19540401 (25 bp)
CCGGTGCGATGTGCCTGCTTGATCA
LOC_Os03g35340
Os.20811.1.A1_s_at--448--9071Chr03:19540362..19540386 (25 bp)
TGCTTGATCACCATGTTGCCAATGA
LOC_Os03g35340
Os.20811.1.A1_s_at--440--9151Chr03:19540266..19540290 (25 bp)
TGCGATCCTTGGCAATGCGTGCAAT
LOC_Os03g35340
Target Sequence 
AAGGTTCTCTTCAACAACCACAAGAGCAGCCAATGCCATATCCACTAAATACTATTCAGCCTCAGGTGCCATTGCAGTTT
CCGAACCAGCTTCATGTTCCACAACTACAATTTTACCATCAGACTCAGGAGTCTGTCTTGNNCAACCGATTGGGCAGAGT
GCACAACAGCAGANGGACTCTGGGATGAATTTAAATCATTTTTTTTCATCTCCAGAAGCTATTCAGAGTCTGTTGAGTGA
TCGTGACAAGCTTTGTAAGCTTTTGGAGCAGAACCCCAAACTCATGCAGATGCTTCAGGATCGTATTGGCCAGCTATAAC
TGAAATGGGAGGCGCCGGTGCGATGTGCCTGCTTGATCACCATGTTGCCAATGACAAATTAAGTCTTCTCTTTTTCTTTG
TTCATATCTGTGAGCTAGGGGCAAACATGATGAGGTATTTATTGTTGCGATCCTTGGCAATGCGTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20811.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis