Browse Element(s) Details


OsAffx.11.1.A1_at

Description gb:NM_197858.1
DB_XREF= gi:37537075
TID=OsAffx.11.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0003O19.13), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g353401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35330NANA3+19523407..19525077retrotransposon, putative, centromere-specific
LOC_Os03g35340OsAffx.10482.1.S1_x_at11/113+19540058..19559250expressed protein
LOC_Os03g35340Os.20811.1.A1_s_at11/113+19540058..19559250expressed protein
LOC_Os03g35340Os.20811.2.S1_s_at11/113+19540058..19559250expressed protein
LOC_Os03g35340OsAffx.10482.2.S1_at11/113+19540058..19559250expressed protein
LOC_Os03g35340OsAffx.11.1.A1_at1/113+19540058..19559250expressed protein
LOC_Os03g35350OsAffx.10483.1.S1_at11/113+19560043..19560375hypothetical protein
LOC_Os03g35360OsAffx.13187.1.S1_at11/113+19567560..19568039hypothetical protein
LOC_Os03g35370NANA3+19569548..19571275hypothetical protein
LOC_Os03g35380Os.54287.1.S1_at4/113+19571790..19575296Transposable element protein, putative, Transposase_28
LOC_Os03g35390Os.1709.1.S1_x_at9/113+19575896..19581808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35390Os.31497.2.S1_x_at1/113+19575896..19581808retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11.1.A1_at--323--4271NONE
CCTCCTTGCCGGTTGAACCAGCGAA
NONE
OsAffx.11.1.A1_at--482--3611Chr10:22457496..22457516 (21 bp)
CTTGCCGGTTGAACCAGCGAACCAT
NONE
OsAffx.11.1.A1_at--238--6651Chr10:22457499..22457523 (25 bp)
GTTGAACCAGCGAACCATTGAACCG
NONE
OsAffx.11.1.A1_at--402--5431Chr10:22457502..22457526 (25 bp)
GAACCAGCGAACCATTGAACCGAGA
NONE
OsAffx.11.1.A1_at--1088--1491Chr10:22457507..22457531 (25 bp)
AGCGAACCATTGAACCGAGAGCCTC
NONE
OsAffx.11.1.A1_at--1097--4095Chr10:22457509..22457533 (25 bp)
CGAACCATTGAACCGAGAGCCTCAC
NONE
OsAffx.11.1.A1_at--878--3591Chr10:22457514..22457538 (25 bp)
CATTGAACCGAGAGCCTCACCAGTT
NONE
OsAffx.11.1.A1_at--207--5431Chr10:22457518..22457542 (25 bp)
GAACCGAGAGCCTCACCAGTTCGAT
NONE
OsAffx.11.1.A1_at--100--6011Chr10:22457523..22457547 (25 bp)
GAGAGCCTCACCAGTTCGATTACTG
NONE
OsAffx.11.1.A1_at--340--5871Chr10:22457525..22457549 (25 bp)
GAGCCTCACCAGTTCGATTACTGGT
NONE
OsAffx.11.1.A1_at--22--4471Chr10:22457527..22457551 (25 bp)
GCCTCACCAGTTCGATTACTGGTCC
NONE
Target Sequence 
CCTCCTTGCCGGTTGAACCAGCGAACCATTGAACCGAGAGCCTCACCAGTTCGATTACTGGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis