Browse Element(s) Details


OsAffx.13187.1.S1_at

Description gb:NM_184734.1
DB_XREF= gi:34896557
TID=OsAffx.13187.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0053G10.29), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3536011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35340OsAffx.10482.1.S1_x_at11/113+19540058..19559250expressed protein
LOC_Os03g35340Os.20811.1.A1_s_at11/113+19540058..19559250expressed protein
LOC_Os03g35340Os.20811.2.S1_s_at11/113+19540058..19559250expressed protein
LOC_Os03g35340OsAffx.10482.2.S1_at11/113+19540058..19559250expressed protein
LOC_Os03g35340OsAffx.11.1.A1_at1/113+19540058..19559250expressed protein
LOC_Os03g35350OsAffx.10483.1.S1_at11/113+19560043..19560375hypothetical protein
LOC_Os03g35360OsAffx.13187.1.S1_at11/113+19567560..19568039hypothetical protein
LOC_Os03g35370NANA3+19569548..19571275hypothetical protein
LOC_Os03g35380Os.54287.1.S1_at4/113+19571790..19575296Transposable element protein, putative, Transposase_28
LOC_Os03g35390Os.1709.1.S1_x_at9/113+19575896..19581808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35390Os.31497.2.S1_x_at1/113+19575896..19581808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35400OsAffx.22713.1.S1_at11/113+19584478..19587341retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13187.1.S1_at--938--7571Chr03:19567603..19567627 (25 bp)
GGGCGGCCCAAGGAGCTCCAATGAG
LOC_Os03g35360
OsAffx.13187.1.S1_at--900--1911Chr03:19567646..19567670 (25 bp)
ACGGTGGCAGCGTTCCGACGACTAT
LOC_Os03g35360
OsAffx.13187.1.S1_at--543--1631Chr03:19567654..19567678 (25 bp)
AGCGTTCCGACGACTATCGGACAAA
LOC_Os03g35360
OsAffx.13187.1.S1_at--402--5791Chr03:19567662..19567686 (25 bp)
GACGACTATCGGACAAAATCGAGGA
LOC_Os03g35360
OsAffx.13187.1.S1_at--937--9931Chr03:19567668..19567692 (25 bp)
TATCGGACAAAATCGAGGAGTGGCT
LOC_Os03g35360
OsAffx.13187.1.S1_at--641--5731Chr03:19567705..19567729 (25 bp)
GACGTCGGCCGGTACTCAGCCTCGG
LOC_Os03g35360
OsAffx.13187.1.S1_at--71--6131Chr03:19567865..19567889 (25 bp)
GAGGGAGCCCGCCACGGGAAAGGCG
LOC_Os03g35360
OsAffx.13187.1.S1_at--575--6131Chr03:19567889..19567913 (25 bp)
GAGGGCGGCACCAAGAATGGCGGCC
LOC_Os03g35360
OsAffx.13187.1.S1_at--1075--2291Chr03:19567936..19567960 (25 bp)
AAATGGCGCGGCCATTCCGGGTGAT
LOC_Os03g35360
OsAffx.13187.1.S1_at--824--3591Chr03:19567948..19567972 (25 bp)
CATTCCGGGTGATTGAGGGCGCCAT
LOC_Os03g35360
OsAffx.13187.1.S1_at--380--4251Chr03:19567952..19567976 (25 bp)
CCGGGTGATTGAGGGCGCCATTCAA
LOC_Os03g35360
Target Sequence 
GGGCGGCCCAAGGAGCTCCAATGAGGAGGATGGACAGGGCGGCACGGTGGCAGCGTTCCGACGACTATCGGACAAAATCG
AGGAGTGGCTGGGGTGGAGGGCGACGTCGGCCGGTACTCAGCCTCGGCGGGAGGGGTGGCTGGAGGCGGCCGGCGCCGGG
GAAAGAGGAGGAGGCGGGGAGAGGTGGTGTGGCCATGGGGAAGTTCGGGAGGAGGCAAAAACGAGAGAATGGAAGGAGGG
GTTTTCATTTTATAGTGGAGGGGAGGGAGCCCGCCACGGGAAAGGCGAGGGCGGCACCAAGAATGGCGGCCGGCGGCCAT
GAAAGGTGGCTGGAAATGGCGCGGCCATTCCGGGTGATTGAGGGCGCCATTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13187.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis