Browse Element(s) Details


Os.20811.2.S1_s_at

Description gb:CB668771
DB_XREF= gi:29672496
DB_XREF=OSJNEd16M11.f
CLONE=OSJNEd16M11
TID=Os.20811.2
CNT=7
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.20811 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187219.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3534011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g35330NANA3+19523407..19525077retrotransposon, putative, centromere-specific
LOC_Os03g35340OsAffx.10482.1.S1_x_at11/113+19540058..19559250expressed protein
LOC_Os03g35340Os.20811.1.A1_s_at11/113+19540058..19559250expressed protein
LOC_Os03g35340Os.20811.2.S1_s_at11/113+19540058..19559250expressed protein
LOC_Os03g35340OsAffx.10482.2.S1_at11/113+19540058..19559250expressed protein
LOC_Os03g35340OsAffx.11.1.A1_at1/113+19540058..19559250expressed protein
LOC_Os03g35350OsAffx.10483.1.S1_at11/113+19560043..19560375hypothetical protein
LOC_Os03g35360OsAffx.13187.1.S1_at11/113+19567560..19568039hypothetical protein
LOC_Os03g35370NANA3+19569548..19571275hypothetical protein
LOC_Os03g35380Os.54287.1.S1_at4/113+19571790..19575296Transposable element protein, putative, Transposase_28
LOC_Os03g35390Os.1709.1.S1_x_at9/113+19575896..19581808retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g35390Os.31497.2.S1_x_at1/113+19575896..19581808retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20811.2.S1_s_at--81--3671Chr03:19542199..19542223 (25 bp)
CTTTTCCTCAACCAGATGACAGTCT
LOC_Os03g35340
Os.20811.2.S1_s_at--867--5191Chr03:19542174..19542198 (25 bp)
GCAATCACCACCTGTCATTATTGGG
LOC_Os03g35340
Os.20811.2.S1_s_at--106--9231Chr03:19542141..19542165 (25 bp)
TCCAGGTCCCGTTGTTGATGAGACA
LOC_Os03g35340
Os.20811.2.S1_s_at--495--3051Chr03:19542013..19542037 (25 bp)
AATCTAACATCCCTTCTGAGCGAAA
LOC_Os03g35340
Os.20811.2.S1_s_at--148--2451Chr03:19541991..19542015 (25 bp)
AAAATTTTCAGTTTCTAGCCCAGAG
LOC_Os03g35340
Os.20811.2.S1_s_at--1117--5951Chr03:19541969..19541993 (25 bp)
GAGAAGGTCATGTTCCCCGATCATG
LOC_Os03g35340
Os.20811.2.S1_s_at--387--9131Chr03:19541946..19541970 (25 bp)
TGCGGACGAATCTCCATTTATCTCT
LOC_Os03g35340
Os.20811.2.S1_s_at--1011--171Chr03:19541931..19541955 (25 bp)
ATTTATCTCTCCTACTACTGGATTG
LOC_Os03g35340
Os.20811.2.S1_s_at--758--3331Chr03:19541866..19541890 (25 bp)
CACTGCGACAATTACCTCCAAATAT
LOC_Os03g35340
Os.20811.2.S1_s_at--177--2691Chr03:19541819..19541843 (25 bp)
AAGCTGGCTGAGAGTTCGGTGTCCT
LOC_Os03g35340
Os.20811.2.S1_s_at--372--3451Chr03:19541728..19541752 (25 bp)
CAGTTTCTTCTACGTCTCTACAAAA
LOC_Os03g35340
Target Sequence 
CTTTTCCTCAACCAGATGACAGTCTGCAATCACCACCTGTCATTATTGGGGAGAACTCTCCAGGTCCCGTTGTTGATGAG
ACAGAAAATCAGCAGAATGGAATAAATCTGTTTTCTGGTACAGTTGTATCTGAGAGTGATGAAGCTTGTGAAACTGTCAT
ATCTTCACAGACAGCAATCCGTCAAGAATCTAACATCCCTTCTGAGCGAAAATTTTCAGTTTCTAGCCCAGAGAAGGTCA
TGTTCCCCGATCATGCGGACGAATCTCCATTTATCTCTCCTACTACTGGATTGAAGGTTATACCTGGTTATAGCACACAT
GCTGCACAAGCAACACTGCGACAATTACCTCCAAATATGCATCGGAAAAGAAGCCCACATAAGCTGGCTGAGAGTTCGGT
GTCCTCTGGATCTCATGGACATGATCGTACACTTTACAACAGCCAGCCACCTTTGCCACCGATGCCCCCACCAGTTTCTT
CTACGTCTCTACAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20811.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis