Browse Element(s) Details


Os.2106.1.S2_at

Description gb:AK107048.1
DB_XREF= gi:32992257
TID=Os.2106.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative adaptin (OSJNBa0054L14.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-C11, full insert sequence.
FL= gb:AK070837.1 gb:AK107048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g215302/11expressed protein
LOC_Os12g321201/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21460OsAffx.15536.1.S1_x_at11/116+12399399..12400852retrotransposon protein, putative, unclassified
LOC_Os06g21470Os.27678.1.S1_at11/116+12402832..12409354Poly polymerase central domain containing protein, expressed
LOC_Os06g21470Os.21194.1.S1_at10/116+12402832..12409354Poly polymerase central domain containing protein, expressed
LOC_Os06g21480Os.18173.1.S1_at11/116+12411526..1241434260S ribosomal protein L31, putative, expressed
LOC_Os06g21489NANA6+12415302..12417472transposon protein, putative, Pong sub-class
LOC_Os06g21498NANA6+12417884..12419227transposon protein, putative, Pong sub-class
LOC_Os06g21507NANA6+12420569..12421912transposon protein, putative, Pong sub-class
LOC_Os06g21516NANA6+12422324..12424494transposon protein, putative, Pong sub-class
LOC_Os06g21530Os.2106.1.S2_at2/116+12425185..12425832expressed protein
LOC_Os06g21540OsAffx.27753.1.S1_at11/116+12429001..12429372inhibitor I family protein
LOC_Os06g21550OsAffx.15537.1.S1_at11/116+12430771..12431519expressed protein
LOC_Os06g21560Os.33150.1.S1_at11/116+12433085..12436479CDK5RAP3, putative, expressed
LOC_Os06g21570OsAffx.15538.1.S1_at11/116+12436998..12441743Glycosyl hydrolase family 1 protein, expressed
LOC_Os06g21580Os.25122.1.S1_at10/116+12445398..12447248expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2106.1.S2_at--60--4272Chr12:19347636..19347660 (25 bp)
CCGGCGTTCTACTACCTCAAGAAGG
LOC_Os12g32120
Os.2106.1.S2_at--71--7531Chr06:12425382..12425406 (25 bp)
GTGGACGTGCCGACGTGGATCCCCT
LOC_Os06g21530
Os.2106.1.S2_at--645--9331Chr06:12425173..12425197 (25 bp)
TCGCCGGAGATAGCCTTGCTCATGC
NONE
Os.2106.1.S2_at--923--9051Chr06:12425151..12425175 (25 bp)
TGCTTGGTTCTTGGCTAGAATTAGC
NONE
Os.2106.1.S2_at--170--3191Chr06:12425124..12425148 (25 bp)
CAATTAGTGTTGTTTCGCGTTCATC
NONE
Os.2106.1.S2_at--67--6851Chr06:12425113..12425137 (25 bp)
GTTTCGCGTTCATCTTGTATGTAAG
NONE
Os.2106.1.S2_at--860--2331Chr06:12425086..12425110 (25 bp)
AAAGCGCACCCAGAATCAGTAGTCA
NONE
Os.2106.1.S2_at--309--9651Chr06:12425071..12425095 (25 bp)
TCAGTAGTCAGTAGTTTGCCCATAA
NONE
Os.2106.1.S2_at--9--2291Chr06:12425036..12425060 (25 bp)
AAATGTTTTGTCTCAGAATTTCGAC
NONE
Os.2106.1.S2_at--207--5231Chr06:12425021..12425045 (25 bp)
GAATTTCGACATCTTTTGTTTTTGA
NONE
Os.2106.1.S2_at--939--8771Chr06:12424982..12425006 (25 bp)
TGTTTCTTTTCATCTCAAAACTGGG
NONE
Target Sequence 
CCGGCGTTCTACTACCTCAAGAAGGCGGCGAAGGTGGACGTGCCGACGTGGATCCCCTTCGGCGTCTCCTTCCTCTTCTT
CGGCGCCGCGCTGCTCGGCGTCAGCTACGGCATCGTCTCCGCCAGCTGGGACCCCGCCAGGGAGGGCTCCCTCCTCGGCT
GGAACGAGGCGCGCCGCAACTGGCCCGTCTTCTGGGACTCGCTCCGCGGCGGCGGCGGCGGCCCCTCCTCTCCGCCGCCT
CCTCGCCGGAGATAGCCTTGCTCATGCTTGGTTCTTGGCTAGAATTAGCTACAATTAGTGTTGTTTCGCGTTCATCTTGT
ATGTAAGAAAAAGCGCACCCAGAATCAGTAGTCAGTAGTTTGCCCATAAAGCAACGAGAAAATGTTTTGTCTCAGAATTT
CGACATCTTTTGTTTTTGAGATTTTATTTAAATTGTTTCTTTTCATCTCAAAACTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2106.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis