Browse Element(s) Details


OsAffx.27753.1.S1_at

Description tigr:9634.m02108
TID=OsAffx.27753.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2154011/11inhibitor I family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21470Os.27678.1.S1_at11/116+12402832..12409354Poly polymerase central domain containing protein, expressed
LOC_Os06g21470Os.21194.1.S1_at10/116+12402832..12409354Poly polymerase central domain containing protein, expressed
LOC_Os06g21480Os.18173.1.S1_at11/116+12411526..1241434260S ribosomal protein L31, putative, expressed
LOC_Os06g21489NANA6+12415302..12417472transposon protein, putative, Pong sub-class
LOC_Os06g21498NANA6+12417884..12419227transposon protein, putative, Pong sub-class
LOC_Os06g21507NANA6+12420569..12421912transposon protein, putative, Pong sub-class
LOC_Os06g21516NANA6+12422324..12424494transposon protein, putative, Pong sub-class
LOC_Os06g21530Os.2106.1.S2_at2/116+12425185..12425832expressed protein
LOC_Os06g21540OsAffx.27753.1.S1_at11/116+12429001..12429372inhibitor I family protein
LOC_Os06g21550OsAffx.15537.1.S1_at11/116+12430771..12431519expressed protein
LOC_Os06g21560Os.33150.1.S1_at11/116+12433085..12436479CDK5RAP3, putative, expressed
LOC_Os06g21570OsAffx.15538.1.S1_at11/116+12436998..12441743Glycosyl hydrolase family 1 protein, expressed
LOC_Os06g21580Os.25122.1.S1_at10/116+12445398..12447248expressed protein
LOC_Os06g21590Os.12713.1.S1_at11/116+12451674..12453198Chlorophyll a-b binding protein 6A, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27753.1.S1_at--434--9171Chr06:12429146..12429166 (21 bp)
TGCCCGAATGGCAAGTCGTCGTGGT
LOC_Os06g21540
OsAffx.27753.1.S1_at--687--4191Chr06:12429146..12429168 (23 bp)
CCCGAATGGCAAGTCGTCGTGGTCG
LOC_Os06g21540
OsAffx.27753.1.S1_at--1151--891Chr06:12429194..12429218 (25 bp)
AGGCGATGGCGGTGATCTTGAGGGA
LOC_Os06g21540
OsAffx.27753.1.S1_at--224--6431Chr06:12429207..12429231 (25 bp)
GATCTTGAGGGAGAGGCCTGACATC
LOC_Os06g21540
OsAffx.27753.1.S1_at--1049--9571Chr06:12429209..12429233 (25 bp)
TCTTGAGGGAGAGGCCTGACATCAC
LOC_Os06g21540
OsAffx.27753.1.S1_at--64--1331Chr06:12429218..12429242 (25 bp)
AGAGGCCTGACATCACCAGGGCCAT
LOC_Os06g21540
OsAffx.27753.1.S1_at--1065--1711Chr06:12429232..12429256 (25 bp)
ACCAGGGCCATCCTTGTGCCGCAGG
LOC_Os06g21540
OsAffx.27753.1.S1_at--421--1091Chr06:12429235..12429259 (25 bp)
AGGGCCATCCTTGTGCCGCAGGACG
LOC_Os06g21540
OsAffx.27753.1.S1_at--1010--4071Chr06:12429270..12429294 (25 bp)
CGACGACTACTGCTGCAACCGCGTT
LOC_Os06g21540
OsAffx.27753.1.S1_at--1144--4751Chr06:12429281..12429305 (25 bp)
GCTGCAACCGCGTTCGGATCCTCGT
LOC_Os06g21540
OsAffx.27753.1.S1_at--257--4631Chr06:12429290..12429314 (25 bp)
GCGTTCGGATCCTCGTCGACTGCGG
LOC_Os06g21540
Target Sequence 
TGCCCGAATGGCAAGTCGTCGTGGTCGGAGCTGGTGGGGAAGAAGGGCAGCGAGGCGATGGCGGTGATCTTGAGGGAGAG
GCCTGACATCACCAGGGCCATCCTTGTGCCGCAGGACGCCGTCATCACCGACGACTACTGCTGCAACCGCGTTCGGATCC
TCGTCGACTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27753.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis