Browse Element(s) Details


Os.12713.1.S1_at

Description gb:AF094776.1
DB_XREF= gi:3789953
GEN=Cab26
TID=Os.12713.1
CNT=170
FEA=FLmRNA
TIER=FL+Stack
STK=37
UG=Os.12713 (NCBI UniGene Cluster)
DEF=Oryza sativa chlorophyll ab-binding protein precursor (Cab26) mRNA, nuclear gene encoding chloroplast protein, complete cds.
PROD=chlorophyll ab-binding protein precursor
FL= gb:AF094776.1 gb:AK098864.1 gb:AK060800.1 gb:AK060904.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2159011/11Chlorophyll a-b binding protein 6A, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21540OsAffx.27753.1.S1_at11/116+12429001..12429372inhibitor I family protein
LOC_Os06g21550OsAffx.15537.1.S1_at11/116+12430771..12431519expressed protein
LOC_Os06g21560Os.33150.1.S1_at11/116+12433085..12436479CDK5RAP3, putative, expressed
LOC_Os06g21570OsAffx.15538.1.S1_at11/116+12436998..12441743Glycosyl hydrolase family 1 protein, expressed
LOC_Os06g21580Os.25122.1.S1_at10/116+12445398..12447248expressed protein
LOC_Os06g21590Os.12713.1.S1_at11/116+12451674..12453198Chlorophyll a-b binding protein 6A, chloroplast precursor, putative, expressed
LOC_Os06g21600Os.9272.1.S1_at11/116+12455787..12461589Uncharacterized ACR, YdiU/UPF0061 family protein, expressed
LOC_Os06g21610OsAffx.29313.1.S1_at1/116+12463880..12469800transposon protein, putative, Mutator sub-class
LOC_Os06g21620OsAffx.15539.1.S1_at10/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21620Os.23402.1.A1_at7/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21620Os.53962.1.S1_at1/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21630OsAffx.4895.1.S1_at11/116+12476057..12477181hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009768biological_processphotosynthesis, light harvesting in photosystem I
GO:0009769biological_processphotosynthesis, light harvesting in photosystem II
GO:0015979biological_processphotosynthesis
GO:0009517cellular_componentPSII associated light-harvesting complex II
GO:0009533cellular_componentchloroplast stromal thylakoid
GO:0009783cellular_componentphotosystem II antenna complex
GO:0030076cellular_componentlight-harvesting complex
GO:0042651cellular_componentthylakoid membrane
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12713.1.S1_at--734--9171Chr06:12452383..12452407 (25 bp)
TGCCGACGATCCTGGTCATCGAGTT
LOC_Os06g21590
Os.12713.1.S1_at--238--4251Chr06:12452512..12452536 (25 bp)
CCGTCAAGTTCGAGGAGTACAAGCT
LOC_Os06g21590
Os.12713.1.S1_at--999--8431Chr06:12452671..12452695 (25 bp)
GGCCATGCTGGCTTTTGTGGGTTTC
LOC_Os06g21590
Os.12713.1.S1_at--745--10391Chr06:12452683..12452707 (25 bp)
TTTTGTGGGTTTCTGCGTCCAACAG
LOC_Os06g21590
Os.12713.1.S1_at--980--6831Chr06:12452691..12452715 (25 bp)
GTTTCTGCGTCCAACAGTCGGCGTA
LOC_Os06g21590
Os.12713.1.S1_at--314--4711Chr06:12452719..12452743 (25 bp)
GGGCACCGGCCCACTGGAGAACCTG
LOC_Os06g21590
Os.12713.1.S1_at--630--1791Chr06:12452760..12452784 (25 bp)
ACCCGTGGCACAACAACATCGGCGA
LOC_Os06g21590
Os.12713.1.S1_at--890--431Chr06:12452804..12452828 (25 bp)
ATCTACCCTTGAGCTTGGCACGAAC
LOC_Os06g21590
Os.12713.1.S1_at--843--3811Chr06:12452947..12452971 (25 bp)
CTGCTGGTTGGCCTTGTAATGTAAA
LOC_Os06g21590
Os.12713.1.S1_at--994--6131Chr06:12452981..12453005 (25 bp)
GAGGGTGCTCTCTTGTGAATCCGTC
LOC_Os06g21590
Os.12713.1.S1_at--1065--5251Chr06:12452997..12453021 (25 bp)
GAATCCGTCCATCTTAATTTTTGTA
LOC_Os06g21590
Target Sequence 
TGCCGACGATCCTGGTCATCGAGTTCGTCGCCATCGCCTTCGCCGAGCACCAGCGCACCATGGAGAAGGACCCCGAGAAG
AAGAAGTACCCCGGCGGCGCCTTCGACCCCCTCGGCTTCTCCAAGGACCCCGTCAAGTTCGAGGAGTACAAGCTCAAGGA
GATCAAGAACGGGNNCGATTGGCCATGCTGGCTTTTGTGGGTTTCTGCGTCCAACAGTCGGCGTACCCGGGCACCGGCCC
ACTGGAGAACCTGGCCAGCCACCTCTCGGACCCGTGGCACAACAACATCGGCGACATCATCATCCCGAGAACCATCTACC
CTTGAGCTTGGCACGAACCGGTGCGTGCGTCCGGGCGTACGTGAAGGCTATGGGNGGTTTTTATGTGCGTGCNTACTGTG
TGTGATTGGTTGATTATTGCGCGCGCGTGCGCACGCAGTGGTCGGCCGGCAGGCAGCTGCTGGTTGGCCTTGTAATGTAA
AGCTTAAGTAGAGGGTGCTCTCTTGTGAATCCGTCCATCTTAATTTTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12713.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis