Browse Element(s) Details


Os.9272.1.S1_at

Description gb:AK072187.1
DB_XREF= gi:32982210
TID=Os.9272.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013145E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013145E07, full insert sequence.
FL= gb:AK072187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2160011/11Uncharacterized ACR, YdiU/UPF0061 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21550OsAffx.15537.1.S1_at11/116+12430771..12431519expressed protein
LOC_Os06g21560Os.33150.1.S1_at11/116+12433085..12436479CDK5RAP3, putative, expressed
LOC_Os06g21570OsAffx.15538.1.S1_at11/116+12436998..12441743Glycosyl hydrolase family 1 protein, expressed
LOC_Os06g21580Os.25122.1.S1_at10/116+12445398..12447248expressed protein
LOC_Os06g21590Os.12713.1.S1_at11/116+12451674..12453198Chlorophyll a-b binding protein 6A, chloroplast precursor, putative, expressed
LOC_Os06g21600Os.9272.1.S1_at11/116+12455787..12461589Uncharacterized ACR, YdiU/UPF0061 family protein, expressed
LOC_Os06g21610OsAffx.29313.1.S1_at1/116+12463880..12469800transposon protein, putative, Mutator sub-class
LOC_Os06g21620OsAffx.15539.1.S1_at10/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21620Os.23402.1.A1_at7/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21620Os.53962.1.S1_at1/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21630OsAffx.4895.1.S1_at11/116+12476057..12477181hypothetical protein
LOC_Os06g21640OsAffx.447.1.S1_at10/116+12481570..12485827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21640Os.52609.1.S1_at1/116+12481570..12485827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21640OsAffx.22947.2.S1_x_at1/116+12481570..12485827retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9272.1.S1_at--376--9731Chr06:12456363..12456387 (25 bp)
TCAAGTGGCGTTCCTGACGAAGAAA
LOC_Os06g21600
Os.9272.1.S1_at--12--4791Chr06:12456333..12456357 (25 bp)
GCTGCCATGAACTCTGTTAATCCAA
LOC_Os06g21600
Os.9272.1.S1_at--452--6731Chr06:12456303..12456327 (25 bp)
GTTCTTCGGAACTATCTCTGCCAGA
LOC_Os06g21600
Os.9272.1.S1_at--317--831Chr06:12456189..12456213 (25 bp)
ATGGAGAAATATGCCCGGTTGCCAC
LOC_Os06g21600
Os.9272.1.S1_at--101--891Chr06:12456150..12456174 (25 bp)
AGGCCAGGAGTGTGCATGCTGTCCT
LOC_Os06g21600
Os.9272.1.S1_at--159--9131Chr06:12456134..12456158 (25 bp)
TGCTGTCCTGCTCATCATGAAACCA
LOC_Os06g21600
Os.9272.1.S1_at--213--8971Chr06:12456117..12456141 (25 bp)
TGAAACCAACATTCCATCACGTCAA
LOC_Os06g21600
Os.9272.1.S1_at--544--6151Chr06:12456050..12456074 (25 bp)
GAGGTTTAATTTTGAGCTACTGCTA
LOC_Os06g21600
Os.9272.1.S1_at--779--9691Chr06:12456011..12456035 (25 bp)
TCACATGCTATTTTACTGCCGATGC
LOC_Os06g21600
Os.9272.1.S1_at--556--7331Chr06:12455826..12455850 (25 bp)
GTGCATTTAGTTTTAGCTGTCCATC
LOC_Os06g21600
Os.9272.1.S1_at--338--8711Chr06:12455809..12455833 (25 bp)
TGTCCATCTAATTATGTCCAGCAAC
LOC_Os06g21600
Target Sequence 
TCAAGTGGCGTTCCTGACGAAGAAAGGAAAGCTGCCATGAACTCTGTTAATCCAAAGTATGTTCTTCGGAACTATCTCTG
CCAGACTGCAATTGACGCAGCTGAGCAAGGTGATTATGATGAAGTTCGTCGGTTATTGAAAGTTATGGAACATCCATATG
ATGAGCAGCCAGGAATGGAGAAATATGCCCGGTTGCCACCAGCCTGGGCATACAGGCCAGGAGTGTGCATGCTGTCCTGC
TCATCATGAAACCAACATTCCATCACGTCAAATATGCAAACTTGTTTTTTTTATATTATTTTTTTCTGTATAGGAGGTTT
AATTTTGAGCTACTGCTATAGTGTCTAAAGCATCACATGCTATTTTACTGCCGATGCATATCAGAAACTGGTGTTGTTAA
TCTTCGAGTTATCATATTGTTGACGGTAGCTAAGCGTTCATAGCAGTTGGGAAATAGAGCCACCAAACTCATCCGATTTT
CTTAGATATAGTGCTTTGTTGTTGTGAACAGATTATATTNNCGCAGATGAACATGATGTGCATTTAGTTTTAGCTGTCCA
TCTAATTATGTCCAGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis