Browse Element(s) Details


Os.33150.1.S1_at

Description gb:AK067233.1
DB_XREF= gi:32977251
TID=Os.33150.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.33150 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033051I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095B21, full insert sequence.
FL= gb:AK067233.1 gb:AK101600.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2156011/11CDK5RAP3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21470Os.27678.1.S1_at11/116+12402832..12409354Poly polymerase central domain containing protein, expressed
LOC_Os06g21470Os.21194.1.S1_at10/116+12402832..12409354Poly polymerase central domain containing protein, expressed
LOC_Os06g21480Os.18173.1.S1_at11/116+12411526..1241434260S ribosomal protein L31, putative, expressed
LOC_Os06g21489NANA6+12415302..12417472transposon protein, putative, Pong sub-class
LOC_Os06g21498NANA6+12417884..12419227transposon protein, putative, Pong sub-class
LOC_Os06g21507NANA6+12420569..12421912transposon protein, putative, Pong sub-class
LOC_Os06g21516NANA6+12422324..12424494transposon protein, putative, Pong sub-class
LOC_Os06g21530Os.2106.1.S2_at2/116+12425185..12425832expressed protein
LOC_Os06g21540OsAffx.27753.1.S1_at11/116+12429001..12429372inhibitor I family protein
LOC_Os06g21550OsAffx.15537.1.S1_at11/116+12430771..12431519expressed protein
LOC_Os06g21560Os.33150.1.S1_at11/116+12433085..12436479CDK5RAP3, putative, expressed
LOC_Os06g21570OsAffx.15538.1.S1_at11/116+12436998..12441743Glycosyl hydrolase family 1 protein, expressed
LOC_Os06g21580Os.25122.1.S1_at10/116+12445398..12447248expressed protein
LOC_Os06g21590Os.12713.1.S1_at11/116+12451674..12453198Chlorophyll a-b binding protein 6A, chloroplast precursor, putative, expressed
LOC_Os06g21600Os.9272.1.S1_at11/116+12455787..12461589Uncharacterized ACR, YdiU/UPF0061 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33150.1.S1_at--695--7051Chr06:12435449..12435473 (25 bp)
GTAACCAGAAAACTCTTGACCTTAT
LOC_Os06g21560
Os.33150.1.S1_at--8--5311Chr06:12435677..12435701 (25 bp)
GAAGGCTTAGGTGATTTGTCAGTTA
LOC_Os06g21560
Os.33150.1.S1_at--131--9031Chr06:12435714..12435738 (25 bp)
TGCAAAATGCACTTTCGTCATCCTG
LOC_Os06g21560
Os.33150.1.S1_at--448--7131Chr06:12435730..12435945 (25 bp)
GTCATCCTGGCCTAAGCAAGAGGCA
LOC_Os06g21560
Os.33150.1.S1_at--641--9131Chr06:12436057..12436081 (25 bp)
TGCGAGACAACGCTATCAACTGTAT
LOC_Os06g21560
Os.33150.1.S1_at--1102--3231Chr06:12436073..12436097 (25 bp)
CAACTGTATTTGATGGCAGGCCGGT
LOC_Os06g21560
Os.33150.1.S1_at--565--6711Chr06:12436130..12436154 (25 bp)
GTTCGAGTGTTAGTCAATTAGCTGG
LOC_Os06g21560
Os.33150.1.S1_at--281--7991Chr06:12436153..12436177 (25 bp)
GGATGACTGTACTAGCCGGATGACT
LOC_Os06g21560
Os.33150.1.S1_at--475--9971Chr06:12436165..12436189 (25 bp)
TAGCCGGATGACTGTACCTGAAATA
LOC_Os06g21560
Os.33150.1.S1_at--865--7891Chr06:12436222..12436246 (25 bp)
GGTTCATACTTTAACAACTTGTCTG
LOC_Os06g21560
Os.33150.1.S1_at--414--10711Chr06:12436265..12436289 (25 bp)
TTGCTGCCTGAATCAAATGTTCTTT
LOC_Os06g21560
Target Sequence 
GTAACCAGAAAACTCTTGACCTTATAATGATTCTCAACTCAAAAAGGTTTTTAGACAGATTAGTATCAACATTAGAAGAC
AAGAAGCATCATGAGGTGAAACTACGAGAAGGCTTAGGTGATTTGTCAGTTAAGCGAATGGAGCTGCAAAATGCACTTTC
GTCATCCTGGCCTAAGCAAGAGGCAGCAATTACAAAAACCAGGGAACTCAAGAAGCTCTGCGAGACAACGCTATCAACTG
TATTTGATGGCAGGCCGGTGCATATAATTGGAGAGATCAATACTTTACTAAGTTCGAGTGTTAGTCAATTAGCTGGATGA
CTGTACTAGCCGGATGACTGTACCTGAAATAAGATGAGATTGAAAGCTGGTTGATTACATCAAGGTTCATACTTTAACAA
CTTGTCTGGTTGTACTTGGGTTATTTTTGCTGCCTGAATCAAATGTTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33150.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis