Browse Element(s) Details


OsAffx.15538.1.S1_at

Description tigr:9634.m02112
TID=OsAffx.15538.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=beta-glucosidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2157011/11Glycosyl hydrolase family 1 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21480Os.18173.1.S1_at11/116+12411526..1241434260S ribosomal protein L31, putative, expressed
LOC_Os06g21489NANA6+12415302..12417472transposon protein, putative, Pong sub-class
LOC_Os06g21498NANA6+12417884..12419227transposon protein, putative, Pong sub-class
LOC_Os06g21507NANA6+12420569..12421912transposon protein, putative, Pong sub-class
LOC_Os06g21516NANA6+12422324..12424494transposon protein, putative, Pong sub-class
LOC_Os06g21530Os.2106.1.S2_at2/116+12425185..12425832expressed protein
LOC_Os06g21540OsAffx.27753.1.S1_at11/116+12429001..12429372inhibitor I family protein
LOC_Os06g21550OsAffx.15537.1.S1_at11/116+12430771..12431519expressed protein
LOC_Os06g21560Os.33150.1.S1_at11/116+12433085..12436479CDK5RAP3, putative, expressed
LOC_Os06g21570OsAffx.15538.1.S1_at11/116+12436998..12441743Glycosyl hydrolase family 1 protein, expressed
LOC_Os06g21580Os.25122.1.S1_at10/116+12445398..12447248expressed protein
LOC_Os06g21590Os.12713.1.S1_at11/116+12451674..12453198Chlorophyll a-b binding protein 6A, chloroplast precursor, putative, expressed
LOC_Os06g21600Os.9272.1.S1_at11/116+12455787..12461589Uncharacterized ACR, YdiU/UPF0061 family protein, expressed
LOC_Os06g21610OsAffx.29313.1.S1_at1/116+12463880..12469800transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15538.1.S1_at--145--7971Chr06:12438003..12438027 (25 bp)
GGATCATTCGACTTCATCGGTCTCA
LOC_Os06g21570
OsAffx.15538.1.S1_at--932--491Chr06:12437988..12438012 (25 bp)
ATCGGTCTCAATTACTATACAGCAA
LOC_Os06g21570
OsAffx.15538.1.S1_at--586--10851Chr06:12437576..12437801 (25 bp)
TTGGTCCAAAGGCTGGTTCATCTTG
LOC_Os06g21570
OsAffx.15538.1.S1_at--217--9611Chr06:12437559..12437583 (25 bp)
TCATCTTGGCTCTACATCTATCCAA
LOC_Os06g21570
OsAffx.15538.1.S1_at--401--6191Chr06:12437503..12437527 (25 bp)
GAGGACATACAACAACCCTACTATC
LOC_Os06g21570
OsAffx.15538.1.S1_at--69--8011Chr06:12437353..12437377 (25 bp)
GGAGGCCTTAATTGACACTACCAGA
LOC_Os06g21570
OsAffx.15538.1.S1_at--162--3091Chr06:12437329..12437353 (25 bp)
AATAGAGTTCTACCGGCAACACCTA
LOC_Os06g21570
OsAffx.15538.1.S1_at--367--1751Chr06:12437309..12437333 (25 bp)
ACCTATTCCATGTTCAGAGAGCCCT
LOC_Os06g21570
OsAffx.15538.1.S1_at--713--3671Chr06:12437118..12437142 (25 bp)
CTTTGCATGGTCACTGTTCGACAAT
LOC_Os06g21570
OsAffx.15538.1.S1_at--95--8591Chr06:12437079..12437103 (25 bp)
TGGTTACAGCGTTCGATTCGGCATT
LOC_Os06g21570
OsAffx.15538.1.S1_at--23--8291Chr06:12437060..12437084 (25 bp)
GGCATTAACTACATCGACTACAAGG
LOC_Os06g21570
Target Sequence 
GGATCATTCGACTTCATCGGTCTCAATTACTATACAGCAAGATATATTCAGGGTACTAAACAAGATAGTAACAGTCACAA
AAGTTACAGCACTGATTCACTGACTAATGAGAGAGTGGAAAGAAATGGAACAGATATTGGTCCAAAGGCTGGTTCATCTT
GGCTCTACATCTATCCAAAAGGAATAGAGGAACTATTGCTATACACCAAGAGGACATACAACAACCCTACTATCTACATC
ACAGAAAATGGTGTTGATGAGGTTAACAATGAAAATTTATCTCTTAAGGAGGCCTTAATTGACACTACCAGAATAGAGTT
CTACCGGCAACACCTATTCCATGTTCAGAGAGCCCTAAGGCAAGGAGTTGATGTACGAGGATACTTTGCATGGTCACTGT
TCGACAATTTCGAGTGGATGGATGGTTACAGCGTTCGATTCGGCATTAACTACATCGACTACAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis