Browse Element(s) Details


Os.18173.1.S1_at

Description gb:AK120884.1
DB_XREF= gi:37990507
TID=Os.18173.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18173 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023028N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028N24, full insert sequence.
FL= gb:AK120884.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2148011/1160S ribosomal protein L31, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21440OsAffx.21161.1.S1_at1/116+12391026..12395775retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21450OsAffx.13200.2.S1_x_at11/116+12396662..12397075retrotransposon protein, putative, unclassified
LOC_Os06g21460OsAffx.15536.1.S1_x_at11/116+12399399..12400852retrotransposon protein, putative, unclassified
LOC_Os06g21470Os.27678.1.S1_at11/116+12402832..12409354Poly polymerase central domain containing protein, expressed
LOC_Os06g21470Os.21194.1.S1_at10/116+12402832..12409354Poly polymerase central domain containing protein, expressed
LOC_Os06g21480Os.18173.1.S1_at11/116+12411526..1241434260S ribosomal protein L31, putative, expressed
LOC_Os06g21489NANA6+12415302..12417472transposon protein, putative, Pong sub-class
LOC_Os06g21498NANA6+12417884..12419227transposon protein, putative, Pong sub-class
LOC_Os06g21507NANA6+12420569..12421912transposon protein, putative, Pong sub-class
LOC_Os06g21516NANA6+12422324..12424494transposon protein, putative, Pong sub-class
LOC_Os06g21530Os.2106.1.S2_at2/116+12425185..12425832expressed protein
LOC_Os06g21540OsAffx.27753.1.S1_at11/116+12429001..12429372inhibitor I family protein
LOC_Os06g21550OsAffx.15537.1.S1_at11/116+12430771..12431519expressed protein
LOC_Os06g21560Os.33150.1.S1_at11/116+12433085..12436479CDK5RAP3, putative, expressed
LOC_Os06g21570OsAffx.15538.1.S1_at11/116+12436998..12441743Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18173.1.S1_at--1126--3491Chr06:12413778..12413802 (25 bp)
CATGGGCACCATTGACGTCAGGGTT
LOC_Os06g21480
Os.18173.1.S1_at--205--3311Chr06:12413821..12413845 (25 bp)
CACATCTGGAGCAGCGGTATCCGGA
LOC_Os06g21480
Os.18173.1.S1_at--110--10691Chr06:12413849..12413873 (25 bp)
TTCCAAGGCGTGTCCGTGTCAGAAT
LOC_Os06g21480
Os.18173.1.S1_at--540--4451Chr06:12413870..12413894 (25 bp)
GAATTGCCCGCAGGAGGAACGACGA
LOC_Os06g21480
Os.18173.1.S1_at--217--9471Chr06:12413922..12413946 (25 bp)
TCTGGTCACTGTTGCTGAGGTTCCC
LOC_Os06g21480
Os.18173.1.S1_at--404--2871Chr06:12413959..12413983 (25 bp)
AAGGGCCTGGGTACCAAGCTTGTCG
LOC_Os06g21480
Os.18173.1.S1_at--1156--4431Chr06:12414002..12414026 (25 bp)
GCCTAGGTTTTGATCTTACCTGCAT
LOC_Os06g21480
Os.18173.1.S1_at--987--6271Chr06:12414175..12414199 (25 bp)
GATGTTGCTGCTCTTTAGTCAGGTA
LOC_Os06g21480
Os.18173.1.S1_at--1006--7851Chr06:12414196..12414220 (25 bp)
GGTATGATTTCATTGCGGCAACCAA
LOC_Os06g21480
Os.18173.1.S1_at--120--10811Chr06:12414273..12414297 (25 bp)
TTGTCCATGACCACTATCTCTATAG
LOC_Os06g21480
Os.18173.1.S1_at--171--8711Chr06:12414299..12414323 (25 bp)
TGTCGCAATCATCAGGAGGCCTACT
LOC_Os06g21480
Target Sequence 
CATGGGCACCATTGACGTCAGGGTTGATGTGAAGCTCAACAAGCACATCTGGAGCAGCGGTATCCGGAGNGTTCCAAGGC
GTGTCCGTGTCAGAATTGCCCGCAGGAGGAACGACGAGGAGGATGCGAAGGAGGAGCTCTACTCTCTGGTCACTGTTGCT
GAGGTTCCCCNAGAGGGGTTGAAGGGCCTGGGTACCAAGCTTGTCGAGGACGATGAGTAAATATGCCTAGGTTTTGATCT
TACCTGCATCAAAGCAATTTTGTGTTCACNAGTTGTTTGAACTAGAATGATCTTGATTAGTAAACTAGCAGAGGTTTTTG
GTACTGAACTATGAGTTATTCAGTGCAGTTGTTTCTGGTTGCCATATTGTTGAGGTCAGGTGCTTAGTTTGATCAGTGAT
GTTGCTGCTCTTTAGTCAGGTATGATTTCATTGCGGCAACCAAAACCTCCGCAAAAACATCAGAACTCGAACGAATGTGG
CTGTGTNTGATTTCATTGTCCATGACCACTATCTCTATAGTTGTCGCAATCATCAGGAGGCCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis