Browse Element(s) Details


OsAffx.4895.1.S1_at

Description tigr:9634.m02118
TID=OsAffx.4895.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2163011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g21590Os.12713.1.S1_at11/116+12451674..12453198Chlorophyll a-b binding protein 6A, chloroplast precursor, putative, expressed
LOC_Os06g21600Os.9272.1.S1_at11/116+12455787..12461589Uncharacterized ACR, YdiU/UPF0061 family protein, expressed
LOC_Os06g21610OsAffx.29313.1.S1_at1/116+12463880..12469800transposon protein, putative, Mutator sub-class
LOC_Os06g21620OsAffx.15539.1.S1_at10/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21620Os.23402.1.A1_at7/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21620Os.53962.1.S1_at1/116+12470841..12475474T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g21630OsAffx.4895.1.S1_at11/116+12476057..12477181hypothetical protein
LOC_Os06g21640OsAffx.447.1.S1_at10/116+12481570..12485827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21640Os.52609.1.S1_at1/116+12481570..12485827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21640OsAffx.22947.2.S1_x_at1/116+12481570..12485827retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g21650OsAffx.27754.1.S1_at11/116+12489568..12489930hypothetical protein
LOC_Os06g21660Os.40360.1.S1_x_at1/116+12498021..12499451hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4895.1.S1_at--336--3531Chr06:12477123..12477147 (25 bp)
CATGCGAGAGCTGGGCTTCCACTGG
LOC_Os06g21630
OsAffx.4895.1.S1_at--943--1411Chr06:12476640..12476664 (25 bp)
AGACACAACATCTTGTCTCGCTTCA
LOC_Os06g21630
OsAffx.4895.1.S1_at--845--1631Chr06:12476593..12476617 (25 bp)
AGCGGGCAATCCCTGCATCGATGTG
LOC_Os06g21630
OsAffx.4895.1.S1_at--831--4531Chr06:12476568..12476592 (25 bp)
GCCCACGGAGGTTGAGCGAGTACTC
LOC_Os06g21630
OsAffx.4895.1.S1_at--242--6091Chr06:12476551..12476575 (25 bp)
GAGTACTCAAGCAACATCGACAACC
LOC_Os06g21630
OsAffx.4895.1.S1_at--180--531Chr06:12476536..12476560 (25 bp)
ATCGACAACCACAGTCTCAGGAGAC
LOC_Os06g21630
OsAffx.4895.1.S1_at--95--1391Chr06:12476515..12476539 (25 bp)
AGACGTCGACGACAACTGTTCTTCG
LOC_Os06g21630
OsAffx.4895.1.S1_at--113--1971Chr06:12476501..12476525 (25 bp)
ACTGTTCTTCGTTGGCATCATGGGC
LOC_Os06g21630
OsAffx.4895.1.S1_at--663--411Chr06:12476485..12476509 (25 bp)
ATCATGGGCGACGACAGCTCAAGTT
LOC_Os06g21630
OsAffx.4895.1.S1_at--492--231Chr06:12476112..12476136 (25 bp)
ATATTTTCACGCAGGAGTCAGGTCA
LOC_Os06g21630
OsAffx.4895.1.S1_at--223--7831Chr06:12476092..12476116 (25 bp)
GGTCAATTGAAACAGCCATCCACTA
LOC_Os06g21630
Target Sequence 
CATGCGAGAGCTGGGCTTCCACTGGTGGTGCGCTGCTCGCTGGAGTCCTCAACAGCGGCTGGAACGACGAAAGAGCGAAC
TCATCGAAGAAATCGATGGCAGACACAACATCTTGTCTCGCTTCACCAACACGGCACGTAGCAGCGGAGCGGGCAATCCC
TGCATCGATGTGGCCCACGGAGGTTGAGCGAGTACTCAAGCAACATCGACAACCACAGTCTCAGGAGACGTCGACGACAA
CTGTTCTTCGTTGGCATCATGGGCGACGACAGCTCAAGTTGCAGGTTGATGACCAGGTTAATATTTTCACGCAGGAGTCA
GGTCAATTGAAACAGCCATCCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4895.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis