Browse Element(s) Details


Os.21068.2.S1_x_at

Description gb:NM_187740.1
DB_XREF= gi:34902565
GEN=OJ1123F12.2
TID=Os.21068.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.21068 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Putative homeodomain protein (OJ1123F12.2), mRNA.
PROD=Putative homeodomain protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0693011/11Associated with HOX family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g06900OsAffx.10050.1.S1_at11/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06900OsAffx.15517.1.S1_at1/113+3468980..3479199DNA topoisomerase family protein, expressed
LOC_Os03g06910OsAffx.24999.1.S1_at11/113+3481643..3483589Rf1 protein, mitochondrial precursor, putative
LOC_Os03g06920Os.43861.1.S1_at11/113+3484678..3491994SNF2 domain-containing protein, putative, expressed
LOC_Os03g06920OsAffx.14946.1.S1_at1/113+3484678..3491994SNF2 domain-containing protein, putative, expressed
LOC_Os03g06930Os.21068.1.S1_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06930Os.21068.2.S1_x_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06930Os.21068.1.S1_x_at11/113+3492402..3496325Associated with HOX family protein, expressed
LOC_Os03g06940Os.13559.1.S1_at11/113+3504226..3510461Beta-galactosidase precursor, putative, expressed
LOC_Os03g06950Os.27134.1.A1_at11/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os03g06950Os.10708.2.S1_at1/113+3519262..3529808Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21068.2.S1_x_at--520--1231Chr03:3493435..3493459 (25 bp)
AGTTCGGCGCGGAGATGGACTCCAA
LOC_Os03g06930
Os.21068.2.S1_x_at--1128--8511Chr03:3493420..3493444 (25 bp)
TGGACTCCAACTCGTCGTCGGAGAA
LOC_Os03g06930
Os.21068.2.S1_x_at--620--9431Chr03:3493352..3493376 (25 bp)
TCGGAGGACCGCGACGAGTTCCAGA
LOC_Os03g06930
Os.21068.2.S1_x_at--506--7551Chr03:3493287..3493311 (25 bp)
GGGCCAGCTCAACAACCCGTTCAAG
LOC_Os03g06930
Os.21068.2.S1_x_at--956--2611Chr03:3493274..3493298 (25 bp)
AACCCGTTCAAGTCGGAGGCGATGG
LOC_Os03g06930
Os.21068.2.S1_x_at--727--8351Chr03:3493079..3493103 (25 bp)
GGCGGCGACGCCAGGTTCGTCTCCT
LOC_Os03g06930
Os.21068.2.S1_x_at--733--1011Chr03:3493067..3493091 (25 bp)
AGGTTCGTCTCCTACGGCGACATGG
LOC_Os03g06930
Os.21068.2.S1_x_at--1048--8651Chr03:3492991..3493015 (25 bp)
TGGGCCTGCAGCACTGCAACAACGC
LOC_Os03g06930
Os.21068.2.S1_x_at--595--1511Chr03:3492949..3492973 (25 bp)
AGCAGCAGGGCCTGCTCTACGGCAG
LOC_Os03g06930
Os.21068.2.S1_x_at--260--8391Chr03:3492920..3492944 (25 bp)
GGCGACTTCGACTACATCAACGGCT
LOC_Os03g06930
Os.21068.2.S1_x_at--301--9371Chr03:3492913..3492937 (25 bp)
TCGACTACATCAACGGCTCCGACGA
LOC_Os03g06930
Target Sequence 
AGTTCGGCGCGGAGATGGACTCCAACTCGTCGTCGGAGAACGGCGGCGGCGGCGGCGGCAAGGGCAAGGACGAGGCGATC
TCGTCGGAGGACCGCGACGAGTTCCAGAGCCCGTCGAGCGCCGCCGCGGCGAGGCACGCCGGCGTCGCGGGCCAGCTCAA
CAACCCGTTCAAGTCGGAGGCGATGGGCGGCGCCGCCCTGGACGTCGGCGTCGGCGTCGTCGGCCTGTCCAGCTGCCTCG
GCGGCGCCATGGGCACGTACGCCACCGGCCTCAACCTGAACCACCACGTGCACCACCCCGGCGCCGGCGGCACCAGCCTA
CTGCACGACGCGCTGCACCACCACCACCACGGCGGCGGCGGCGACGCCAGGTTCGTCTCCTACGGCGACATGGCCGACCT
CGGCGGCGGCGGCGGCTACGACGGCGGCAGCGTGTCGCTGACGCTGGGCCTGCAGCACTGCAACAACGCCGGCCCCGTCC
CGGCCGAGCAGCAGGGCCTGCTCTACGGCAGCGCCGGCGACTTCGACTACATCAACGGCTCCGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21068.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis