Browse Element(s) Details


Os.21083.1.S1_at

Description gb:AK068369.1
DB_XREF= gi:32978387
TID=Os.21083.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21083 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013149N06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149N06, full insert sequence.
FL= gb:AK068369.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1514011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15070NANA5+8540545..8541066hypothetical protein
LOC_Os05g15080OsAffx.26902.1.S1_at11/115+8542996..8543961hypothetical protein
LOC_Os05g15090NANA5+8545153..8549384retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g15100OsAffx.31646.2.S1_at11/115+8550052..8551403hypothetical protein
LOC_Os05g15110Os.10731.1.A1_a_at11/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.46610.1.S1_x_at4/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.47999.2.A1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.25778.1.S1_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.38764.1.S1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.25778.1.S1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.20877.1.S1_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15120OsAffx.26903.1.S1_at11/115+8559715..8560026expressed protein
LOC_Os05g15130Os.20602.2.S1_x_at11/115+8560824..8563004hAT family dimerisation domain containing protein
LOC_Os05g15140Os.21083.1.S1_at11/115+8563863..8568769expressed protein
LOC_Os05g15150Os.50261.1.S1_at11/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15150Os.50261.1.S2_at10/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15160Os.48609.1.S1_s_at11/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.23696.1.S1_x_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15160OsAffx.988.1.S1_at1/115+8579866..8589021Triose phosphate/phosphate translocator, chloroplast precursor, putative, expressed
LOC_Os05g15170NANA5+8592558..8593471Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21083.1.S1_at--373--5971Chr05:8564343..8564367 (25 bp)
GAGAAACCTGTAGACCCTAGCAATG
LOC_Os05g15140
Os.21083.1.S1_at--847--9111Chr05:8564266..8564290 (25 bp)
TGCTGAGGCAGTCCGGACCATACAG
LOC_Os05g15140
Os.21083.1.S1_at--831--1951Chr05:8564228..8564252 (25 bp)
ACTGGAAGTACATCACCGTGGCATT
LOC_Os05g15140
Os.21083.1.S1_at--655--8491Chr05:8564210..8564234 (25 bp)
TGGCATTCCTGATCTTGTTAGTCGC
LOC_Os05g15140
Os.21083.1.S1_at--212--10071Chr05:8564192..8564216 (25 bp)
TAGTCGCTGTCTTCATATACTTGCC
LOC_Os05g15140
Os.21083.1.S1_at--1078--10151Chr05:8564177..8564201 (25 bp)
TATACTTGCCACTCCCAGAAGAAAG
LOC_Os05g15140
Os.21083.1.S1_at--867--7471Chr05:8564104..8564128 (25 bp)
GTGTGTACACTATTTACATCCCTGT
LOC_Os05g15140
Os.21083.1.S1_at--156--1291Chr05:8563995..8564019 (25 bp)
AGATCTGGCCTGAACTCGGTAGTGA
LOC_Os05g15140
Os.21083.1.S1_at--477--6332Chr10:16675046..16675377 (25 bp)
GATGCACTGATGCTCCTGGATGAGT
NONE
Os.21083.1.S1_at--23--2391Chr05:8563941..8563965 (25 bp)
AAACTCTTAGTTTGGCTGCCATTGC
LOC_Os05g15140
Os.21083.1.S1_at--958--71Chr05:8563921..8563945 (25 bp)
ATTGCCCAGTCTTTTGGCCTCTAAG
LOC_Os05g15140
Target Sequence 
GAGAAACCTGTAGACCCTAGCAATGAGGAAGAGAAGACGAGGTCTTCAGAGGATGATGACTCTGGCGGGGAGGGCACTGC
TGAGGCAGTCCGGACCATACAGCCGTCAGTGCTGAACTGGAAGTACATCACCGTGGCATTCCTGATCTTGTTAGTCGCTG
TCTTCATATACTTGCCACTCCCAGAAGAAAGCAGCTCCGTTTGAAGAGGCCAATGCAATGATGGCTAATGTAGTCTGTAG
TGTGTACACTATTTACATCCCTGTTTTTTTTTTCTTTGTTTGTTTCACCCCCTTTCTGCTCATAGAATAAGCAATTTTTG
GTGCTGTAGACTGTGATATGTAGTGTTCAGATCTGGCCTGAACTCGGTAGTGATGCACTGATGCTCCTGGATGAGTGATT
GTAAACTCTTAGTTTGGCTGCCATTGCCCAGTCTTTTGGCCTCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21083.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis