Browse Element(s) Details


OsAffx.31646.2.S1_at

Description tigr:9633.m01332
TID=OsAffx.31646.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1510011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15060NANA5+8530626..8533080retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15070NANA5+8540545..8541066hypothetical protein
LOC_Os05g15080OsAffx.26902.1.S1_at11/115+8542996..8543961hypothetical protein
LOC_Os05g15090NANA5+8545153..8549384retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g15100OsAffx.31646.2.S1_at11/115+8550052..8551403hypothetical protein
LOC_Os05g15110Os.10731.1.A1_a_at11/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.46610.1.S1_x_at4/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.47999.2.A1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.25778.1.S1_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110Os.38764.1.S1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.25778.1.S1_x_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15110OsAffx.20877.1.S1_at1/115+8553463..8556733hypothetical protein
LOC_Os05g15120OsAffx.26903.1.S1_at11/115+8559715..8560026expressed protein
LOC_Os05g15130Os.20602.2.S1_x_at11/115+8560824..8563004hAT family dimerisation domain containing protein
LOC_Os05g15140Os.21083.1.S1_at11/115+8563863..8568769expressed protein
LOC_Os05g15150Os.50261.1.S1_at11/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed
LOC_Os05g15150Os.50261.1.S2_at10/115+8570230..8576318Leucyl-tRNA synthetase, cytoplasmic, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31646.2.S1_at--830--2771Chr05:8550728..8550752 (25 bp)
AAGATGACGTTCACGGACCGGAGCG
LOC_Os05g15100
OsAffx.31646.2.S1_at--654--9091Chr05:8550688..8550712 (25 bp)
TGCTCATGTCGTGCAAGGGCTGGCA
LOC_Os05g15100
OsAffx.31646.2.S1_at--916--2871Chr05:8550674..8550698 (25 bp)
AAGGGCTGGCACAACACGCACCGCG
LOC_Os05g15100
OsAffx.31646.2.S1_at--880--2011Chr05:8550541..8550565 (25 bp)
ACTACGACCTCAAGTGCAAGTTCCT
LOC_Os05g15100
OsAffx.31646.2.S1_at--596--9731Chr05:8550532..8550556 (25 bp)
TCAAGTGCAAGTTCCTCAACTGCAA
LOC_Os05g15100
OsAffx.31646.2.S1_at--977--4451Chr05:8550503..8550527 (25 bp)
GCCTACCGGCTCATCCTGGAATGGT
LOC_Os05g15100
OsAffx.31646.2.S1_at--72--551Chr05:8550491..8550515 (25 bp)
ATCCTGGAATGGTCCGAATTCCTTA
LOC_Os05g15100
OsAffx.31646.2.S1_at--1127--9811Chr05:8550468..8550492 (25 bp)
TAAAGAAAACCACCTTGACGTCAAG
LOC_Os05g15100
OsAffx.31646.2.S1_at--666--1691Chr05:8550417..8550441 (25 bp)
AGCCATGATCGATCTGTGGGCGTTC
LOC_Os05g15100
OsAffx.31646.2.S1_at--366--3071Chr05:8550177..8550201 (25 bp)
AATAAGGAGGAGACTGGATCATCGT
LOC_Os05g15100
OsAffx.31646.2.S1_at--639--9611Chr05:8550153..8550177 (25 bp)
TCATCGTCATCATCGAAGGTGAAGA
LOC_Os05g15100
Target Sequence 
AAGATGACGTTCACGGACCGGAGCGTCGCCCAGCACCGGCTGCTCATGTCGTGCAAGGGCTGGCACAACACGCACCGCGG
CGGCGACGAGCCGTTCCCGTTCGAGGAGCTCCTGACGCCGGCGGAGAAGGCCGCCGCCGACGGCGACGAGGGCCTGCGAG
TGCAGGCCTACGACCGCACCGGCCGGGACTACGACCTCAAGTGCAAGTTCCTCAACTGCAACGACGCCTACCGGCTCATC
CTGGAATGGTCCGAATTCCTTAAAGAAAACCACCTTGACGTCAAGGACAAGAACGCCGCCATGGCCAACGAAGCCATGAT
CGATCTGTGGGCGTTCCGTTCCCGGTGGCTGAGCCATGGCGTGGATGGCCATGAGGACGGCCGGCTCGGGCTGGTGCGGA
AGGCGAAGTTGAAGAAGAATAAGGAGGAGACTGGATCATCGTCATCGTCATCATCGAAGGTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31646.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis