Browse Element(s) Details


Os.21106.1.S1_at

Description gb:AK100885.1
DB_XREF= gi:32986094
TID=Os.21106.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21106 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023128D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023128D23, full insert sequence.
FL= gb:AK100885.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6792011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67870Os.50939.1.S1_at9/111+39764817..39769722expressed protein
LOC_Os01g67870OsAffx.17910.1.S1_at1/111+39764817..39769722expressed protein
LOC_Os01g67880OsAffx.23963.1.S1_x_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67880Os.54646.1.S1_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67890OsAffx.2430.1.S1_at11/111+39786448..39787899SRF-type transcription factor family protein, expressed
LOC_Os01g67900NANA1+39790665..39791009hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_x_at8/111+39792113..39793197hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_at5/111+39792113..39793197hypothetical protein
LOC_Os01g67920Os.21106.1.S1_at11/111+39794462..39800667TPR Domain containing protein, expressed
LOC_Os01g67930NANA1+39805154..39805511hypothetical protein
LOC_Os01g67940NANA1+39807522..39807902hypothetical protein
LOC_Os01g67950Os.38856.1.A1_s_at11/111+39810631..39811639ubiquitin family protein, putative, expressed
LOC_Os01g67960Os.54356.2.S1_at11/111+39813785..39818947GPI transamidase component PIG-S, putative, expressed
LOC_Os01g67960Os.54356.1.S1_at10/111+39813785..39818947GPI transamidase component PIG-S, putative, expressed
LOC_Os01g67970Os.52727.1.S1_at11/111+39820022..39826787jmjC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21106.1.S1_at--940--1291Chr01:39795000..39795024 (25 bp)
AGATGCCCTTTGACTAGAGCTTTAA
LOC_Os01g67920
Os.21106.1.S1_at--992--7011Chr01:39794918..39794942 (25 bp)
GTACTTGGTGGCTATGGACTTCTCA
LOC_Os01g67920
Os.21106.1.S1_at--188--10111Chr01:39794906..39794930 (25 bp)
TATGGACTTCTCACAGGTTCACAGG
LOC_Os01g67920
Os.21106.1.S1_at--456--2131Chr01:39794894..39794918 (25 bp)
ACAGGTTCACAGGTCACAGCATAAG
LOC_Os01g67920
Os.21106.1.S1_at--66--5071Chr01:39794864..39794888 (25 bp)
GCAGCTTCATATGGTTCCCTTGGAA
LOC_Os01g67920
Os.21106.1.S1_at--659--3131Chr01:39794831..39794855 (25 bp)
AATTATTGCCCTTTGTGCAGAGGAC
LOC_Os01g67920
Os.21106.1.S1_at--646--10851Chr01:39794791..39794815 (25 bp)
TTGGTCCGCCAGTTGTACAAGCTAT
LOC_Os01g67920
Os.21106.1.S1_at--117--10131Chr01:39794769..39794793 (25 bp)
TATGAGCTATCCATAGTGCCCCTTC
LOC_Os01g67920
Os.21106.1.S1_at--1150--2451Chr01:39794701..39794725 (25 bp)
AACAAGCATGTACTAGGATTTCCTA
LOC_Os01g67920
Os.21106.1.S1_at--914--3911Chr01:39794559..39794583 (25 bp)
CTGGCTTTGCCATTGAATTCGAATC
LOC_Os01g67920
Os.21106.1.S1_at--212--91Chr01:39794543..39794567 (25 bp)
ATTCGAATCCATGTAACCTCTGTTG
LOC_Os01g67920
Target Sequence 
AGATGCCCTTTGACTAGAGCTTTAAACATGAACAGCATTCATAATGTAGAACGTCGCAATGGAGCNAACTCAGAAGCTGA
TAGTACTTGGTGGCTATGGACTTCTCACAGGTTCACAGGTCACAGCATAAGGAACTGCAGCTTCATATGGTTCCCTTGGA
ATTTGACTAAATTATTGCCCTTTGTGCAGAGGACCATAAGNCCCTGGAGTTGGTCCGCCAGTTGTACAAGCTATGAGCTA
TCCATAGTGCCCCTTCACTCTAGTGAAGGCTCACGTTTTGAAGTATAAAATTTCATTGTAACAAGCATGTACTAGGATTT
CCTACTACTGCAGTACATAACACCTCAGAAGTTTTAGGCTTTTAGCTGTAATAGCTGTACCAGTCCAAGCTTTAGCTGTA
AACAATTACAACATTAGTCTTGTGGCAAACGATGCTAGATGCTGGCTTTGCCATTGAATTCGAATCCATGTAACCTCTGT
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis