Browse Element(s) Details


Os.2117.1.S1_s_at

Description gb:AK069619.1
DB_XREF= gi:32979643
TID=Os.2117.1
CNT=21
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0504D03.18 (P0504D03.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025D18, full insert sequence.
FL= gb:AK069619.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3300011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32980OsAffx.23482.1.S1_x_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.1.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.2.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980Os.25330.2.S1_at1/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32990NANA1+18443658..18447995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33000Os.2117.1.S1_s_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.1.S1_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_x_at10/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_at3/111+18451780..18455740expressed protein
LOC_Os01g33009Os.25448.1.A1_at4/111+18457438..18457945NA
LOC_Os01g33009OsAffx.27522.1.S1_x_at2/111+18457438..18457945NA
LOC_Os01g33020Os.2118.1.S1_at9/111+18462138..18465157Sybindin-like family protein, expressed
LOC_Os01g33030Os.4676.1.S1_at10/111+18467618..18469727Brix domain containing protein, expressed
LOC_Os01g33040Os.32739.1.S1_at11/111+18477785..18484690kinesin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2117.1.S1_s_at--428--10131Chr01:18455324..18455348 (25 bp)
TATGCTTAATAGTCGGTGATCCTCC
LOC_Os01g33000
Os.2117.1.S1_s_at--227--291Chr01:18455332..18455356 (25 bp)
ATAGTCGGTGATCCTCCTGAGGGAA
LOC_Os01g33000
Os.2117.1.S1_s_at--898--6551Chr01:18455415..18455439 (25 bp)
GATTAGCTGTGCTTGTTTGTTGAGC
LOC_Os01g33000
Os.2117.1.S1_s_at--8--6871Chr01:18455429..18455453 (25 bp)
GTTTGTTGAGCTATGCATGCATGTC
LOC_Os01g33000
Os.2117.1.S1_s_at--17--6311Chr01:18455503..18455527 (25 bp)
GATGAGTTTTGATGATATTCCCCTT
LOC_Os01g33000
Os.2117.1.S1_s_at--601--6291Chr01:18455513..18455537 (25 bp)
GATGATATTCCCCTTAATGTCTGTA
LOC_Os01g33000
Os.2117.1.S1_s_at--1087--1471Chr01:18455599..18455623 (25 bp)
AGCAAATTAGAGTCATCCGCATCGT
LOC_Os01g33000
Os.2117.1.S1_s_at--1015--3531Chr01:18455612..18455636 (25 bp)
CATCCGCATCGTTTGTTCTATAGAA
LOC_Os01g33000
Os.2117.1.S1_s_at--385--9631Chr01:18455654..18455678 (25 bp)
TCATGTCTAGACTTGCAATGCACAA
LOC_Os01g33000
Os.2117.1.S1_s_at--1094--10491Chr01:18455680..18455704 (25 bp)
TTAAGAGCTGCTGATGCGTGTAAAC
LOC_Os01g33000
Os.2117.1.S1_s_at--48--9131Chr01:18455688..18455712 (25 bp)
TGCTGATGCGTGTAAACAGTCTGAT
LOC_Os01g33000
Target Sequence 
TATGCTTAATAGTCGGTGATCCTCCTGAGGGAAGTTGAGATGAAAAGTGAAAAAAAAANNNAAAAAAGGACTGAAGAAAA
AGGCAGTAAAAAGATTAGCTGTGCTTGTTTGTTGAGCTATGCATGCATGTCGGGTTGTTGGACTTGTTGAGGCTACTTAT
GTAATCCTACGAATACGGGGGATGAGTTTTGATGATATTCCCCTTAATGTCTGTAAACACTTGTGAAGAGCCNTGTNTGA
CACTACAGACNTGTTGTGTTTGAAGGGAACTTGTAGTTAGCAAATTAGAGTCATCCGCATCGTTTGTTCTATAGAATATA
ATGTTGATACTAATCATGTCTAGACTTGCAATGCACAAATTAAGAGCTGCTGATGCGTGTAAACAGTCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2117.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis