Browse Element(s) Details


Os.2117.2.S1_x_at

Description gb:NM_193785.1
DB_XREF= gi:34914653
GEN=P0504D03.18
TID=Os.2117.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2117 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0504D03.18 (P0504D03.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0504D03.18 (P0504D03.18), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3300010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32980OsAffx.23482.1.S1_x_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.1.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.2.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980Os.25330.2.S1_at1/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32990NANA1+18443658..18447995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33000Os.2117.1.S1_s_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.1.S1_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_x_at10/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_at3/111+18451780..18455740expressed protein
LOC_Os01g33009Os.25448.1.A1_at4/111+18457438..18457945NA
LOC_Os01g33009OsAffx.27522.1.S1_x_at2/111+18457438..18457945NA
LOC_Os01g33020Os.2118.1.S1_at9/111+18462138..18465157Sybindin-like family protein, expressed
LOC_Os01g33030Os.4676.1.S1_at10/111+18467618..18469727Brix domain containing protein, expressed
LOC_Os01g33040Os.32739.1.S1_at11/111+18477785..18484690kinesin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2117.2.S1_x_at--199--7811Chr01:18452507..18452531 (25 bp)
GGTCGTGCAGTATTACGTGCCGTAC
LOC_Os01g33000
Os.2117.2.S1_x_at--869--8051NONE
GGAGACCCCGCAGAAGGCTTCTCAA
NONE
Os.2117.2.S1_x_at--898--5231Chr01:18453821..18453845 (25 bp)
GAATCAGGAGATTTGCATGGCCGCT
LOC_Os01g33000
Os.2117.2.S1_x_at--473--4131Chr01:18453842..18453866 (25 bp)
CGCTTGCTCTTTCAATACCTTGAGT
LOC_Os01g33000
Os.2117.2.S1_x_at--830--6571Chr01:18453869..18453893 (25 bp)
GATTCTCCATTTTGTCGTGAACCAT
LOC_Os01g33000
Os.2117.2.S1_x_at--832--9751Chr01:18453901..18453991 (25 bp)
TAAGGCAAGAATTTCCAGTCTTTCA
LOC_Os01g33000
Os.2117.2.S1_x_at--1020--6511Chr01:18453996..18454020 (25 bp)
GATTTCCAGGACTGAGGACCCTTAG
LOC_Os01g33000
Os.2117.2.S1_x_at--7--6531Chr01:18454193..18454217 (25 bp)
GATTTGGATGCATGCTTTCTCACCT
LOC_Os01g33000
Os.2117.2.S1_x_at--516--7691Chr01:18454916..18454940 (25 bp)
GGGTCCTGGTAGCAAACCGACTATA
LOC_Os01g33000
Os.2117.2.S1_x_at--210--3331Chr01:18454942..18454966 (25 bp)
CACTATCTGTTTTTGGTATGGCTTC
LOC_Os01g33000
Os.2117.2.S1_x_at--504--2691Chr01:18455035..18455059 (25 bp)
AAGCTGCTTCTGACTGGCTGCGGGA
LOC_Os01g33000
Target Sequence 
GGTCGTGCAGTATTACGTGCCGTACTTGTCCGCCATCCAGCTCTATGGAGACCCCGCAGAAGGCTTCTCAAGTGATGATG
GTGAATCAGGAGATTTGCATGGCCGCTTGCTCTTTCAATACCTTGAGTTTGATTCTCCATTTTGTCGTGAACCATTGACT
GATAAGGCAAGAATTTCCAGTCTTTCAGCAAGATTTCCAGGACTGAGGACCCTTAGAAGCTGTGATTTATCACCGCGAAG
TTGGATATCTGTTGCTTGGTATCCAATTTACCGTATCCCTACTGGCCCAACATTAAAAGATTTGGATGCATGCTTTCTCA
CCTTCCATCGGCTATCAACTGGGCCAGAAGAAGATAACGGTGGTGCTGTAAAATACTGGGGTCCTGGTAGCAAACCGACT
ATACCACTATCTGTTTTTGGTATGGCTTCTTACAAGTTCAGCAATTCAATATGGTCTTCGACTGATGGAGATCGGCAGCT
GGCAAGCTTCTTGCAGCAAGCTGCTTCTGACTGGCTGCGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2117.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis