Browse Element(s) Details


Os.2118.1.S1_at

Description gb:AK068877.1
DB_XREF= gi:32978902
TID=Os.2118.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0504D03.19 (P0504D03.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023001F01, full insert sequence.
FL= gb:AK058445.1 gb:AK068877.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g330209/11Sybindin-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g32980OsAffx.23482.1.S1_x_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.1.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980OsAffx.23482.2.S1_at11/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32980Os.25330.2.S1_at1/111+18428412..18438194Mitochondrial carrier protein, expressed
LOC_Os01g32990NANA1+18443658..18447995retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33000Os.2117.1.S1_s_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.1.S1_at11/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_x_at10/111+18451780..18455740expressed protein
LOC_Os01g33000Os.2117.2.S1_at3/111+18451780..18455740expressed protein
LOC_Os01g33009Os.25448.1.A1_at4/111+18457438..18457945NA
LOC_Os01g33009OsAffx.27522.1.S1_x_at2/111+18457438..18457945NA
LOC_Os01g33020Os.2118.1.S1_at9/111+18462138..18465157Sybindin-like family protein, expressed
LOC_Os01g33030Os.4676.1.S1_at10/111+18467618..18469727Brix domain containing protein, expressed
LOC_Os01g33040Os.32739.1.S1_at11/111+18477785..18484690kinesin heavy chain, putative, expressed
LOC_Os01g33050Os.2120.1.S1_a_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33050Os.2120.2.S1_x_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33050Os.2120.1.S1_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2118.1.S1_at--111--3931Chr01:18463978..18464002 (25 bp)
CGGGCCAGGGTTGCTCATTTTACAG
LOC_Os01g33020
Os.2118.1.S1_at--863--51Chr01:18463932..18463956 (25 bp)
ATTGAACTTCCTAGAGAGCCCTTCT
LOC_Os01g33020
Os.2118.1.S1_at--1020--5871Chr01:18463778..18463941 (25 bp)
GAGCCCTTCTGGTATCAAGCTTATT
LOC_Os01g33020
Os.2118.1.S1_at--1156--4371Chr01:18463741..18463765 (25 bp)
CCAAGGACTGGTGATCAACGTGACA
LOC_Os01g33020
Os.2118.1.S1_at--654--1831Chr01:18463717..18463741 (25 bp)
ACGCTGAAGCATATCTACAACCTAT
LOC_Os01g33020
Os.2118.1.S1_at--1074--3171Chr01:18462928..18463001 (25 bp)
CAATCAACAGGTGCGAGCTTTTCAA
LOC_Os01g33020
Os.2118.1.S1_at--255--1311Chr01:18462372..18462394 (23 bp)
AGAGGTTATACCGATCCTAAATACG
LOC_Os01g33020
Os.2118.1.S1_at--361--7131Chr01:18462341..18462365 (25 bp)
GTCATATCTTCTGGGTAACTTTGGT
LOC_Os01g33020
Os.2118.1.S1_at--556--9531Chr01:18462234..18462258 (25 bp)
TCTATCACAAACATTCCCTTGTTCC
LOC_Os01g33020
Os.2118.1.S1_at--1136--6411Chr01:18462128..18462152 (25 bp)
GATCTACATACTCTGATGGCATGCG
NONE
Os.2118.1.S1_at--927--851Chr01:18462113..18462137 (25 bp)
ATGGCATGCGTGTGAATTGTTTATC
NONE
Target Sequence 
CGGGCCAGGGTTGCTCATTTTACAGCTTCAAGACAAACACATACAAATTGAACTTCCTAGAGAGCCCTTCTGGTATCAAG
CTTATTCTAATTACACATCCAAGGACTGGTGATCAACGTGACACGCTGAAGCATATCTACAACCTATATGTGGAATATGT
TGTAAAAAATCCTTTGTACGCTCCTGGCACACCAATCAACAGGTGCGAGCTTTTCAATAAGCACCTTGATCAATATGTCA
AAACATTGATATGATACTTTTAGAGGTTATACCGATCCTAAATACGGTTAATGTCATATCTTCTGGGTAACTTTGGTACG
CTTACTGGTATCAGTGTGCTATTTGATTTATTACTACATTAAGAGGTCTAGTGTTCCTTGAGGAATATGCTAAGACTTTT
CTATCACAAACATTCCCTTGTTCCTGTTGTACATTGAACAATGCTGCATTACATCTGTTGAACTGCACNAAGTTGTTGAT
GTTGAGTGTTCGTTTTGNAAATTGAGATCTACATACTCTGATGGCATGCGTGTGAATTGTTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis