Browse Element(s) Details


Os.21228.1.S1_at

Description gb:AK103149.1
DB_XREF= gi:32988358
TID=Os.21228.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033120N14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033120N14, full insert sequence.
FL= gb:AK058428.1 gb:AK103149.1 gb:AK099117.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3306011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33030Os.12183.1.S1_at11/114+19807021..19808797expressed protein
LOC_Os04g33040Os.7294.1.S1_at11/114+19818732..19822160Alpha amylase, catalytic domain containing protein, expressed
LOC_Os04g33050Os.50201.1.S1_at11/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33050Os.9965.1.S1_at1/114+19822517..19828129forkhead-associated domain-containing protein, putative, expressed
LOC_Os04g33060Os.21228.1.S1_at11/114+19828386..19832229NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g33070Os.38834.1.S1_at1/114+19832690..19832959hypothetical protein
LOC_Os04g33080Os.12150.1.S1_s_at10/114+19834170..19836128protein phosphatase 2C, putative, expressed
LOC_Os04g33090NANA4+19847040..19849171hypothetical protein
LOC_Os04g33100OsAffx.14104.1.S1_at11/114+19851363..19851786hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21228.1.S1_at--260--8751Chr04:19831659..19831683 (25 bp)
TGTACTGAGGCCTGGTTTCATTTAT
LOC_Os04g33060
Os.21228.1.S1_at--415--6051Chr04:19831708..19831732 (25 bp)
GAGATACCACTCGATGTTGTAGGAC
LOC_Os04g33060
Os.21228.1.S1_at--419--6071Chr04:19831782..19831806 (25 bp)
GAGTTCATTGCCAGCTTCTGACTTA
LOC_Os04g33060
Os.21228.1.S1_at--1065--7471Chr04:19831826..19831850 (25 bp)
GTGTGGATGATGTTGCCTATGCTGT
LOC_Os04g33060
Os.21228.1.S1_at--990--8611Chr04:19831881..19831905 (25 bp)
TGGTGTCTTCACGATTGAGCAAATC
LOC_Os04g33060
Os.21228.1.S1_at--368--7051Chr04:19831932..19831956 (25 bp)
GTAAACTGGGAGTCTTTATTGCCAA
LOC_Os04g33060
Os.21228.1.S1_at--501--5351Chr04:19831961..19831985 (25 bp)
GAAGATTCAAACATGCGGCTCCTTA
LOC_Os04g33060
Os.21228.1.S1_at--228--2791Chr04:19831988..19832012 (25 bp)
AAGAGATATCCCTGTTCTGTCTTGC
LOC_Os04g33060
Os.21228.1.S1_at--1--8731Chr04:19832005..19832029 (25 bp)
TGTCTTGCACTCTTGCAGTCTTAGA
LOC_Os04g33060
Os.21228.1.S1_at--279--6911Chr04:19832074..19832098 (25 bp)
GTATGAATGTGGTGCTTGTTCCCTC
LOC_Os04g33060
Os.21228.1.S1_at--1098--2951Chr04:19832131..19832155 (25 bp)
AAGGCCAATGCGCTTCATTTCTTAC
LOC_Os04g33060
Target Sequence 
TGTACTGAGGCCTGGTTTCATTTATGGTAAAAGGAAAGTAGATGGTTTTGAGATACCACTCGATGTTGTAGGACAACCAT
TAGAAAAGCTACTTTCCTCTGTTGAAAATTTCACAAAACCGCTGAGTTCATTGCCAGCTTCTGACTTACTCCTTGCACCC
CCAGTGAGTGTGGATGATGTTGCCTATGCTGTGATCAATGGAGTTATAGATGACAGCTTCTTTGGTGTCTTCACGATTGA
GCAAATCAAGGAAGCCGCGGCGAAAGTAAGAGTGTAAACTGGGAGTCTTTATTGCCAAGATGGAAGATTCAAACATGCGG
CTCCTTATTAAGAGATATCCCTGTTCTGTCTTGCACTCTTGCAGTCTTAGATCATACATTCAATGGTTAAAGTTAAATTC
AAAACTTTGTACAGTGTATGAATGTGGTGCTTGTTCCCTCCAAGCAGAGAGGAAGAATGGGCTTTGATGGCAAAGGCCAA
TGCGCTTCATTTCTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis