Browse Element(s) Details


Os.21284.2.S1_x_at

Description gb:AK106575.1
DB_XREF= gi:32991784
TID=Os.21284.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21284 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-B10, full insert sequence.
FL= gb:AK106575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1344010/11Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13400Os.51704.1.S1_at11/1112+7493991..7495614expressed protein
LOC_Os12g13410OsAffx.8992.1.S1_x_at1/1112+7501055..7501531hypothetical protein
LOC_Os12g13420OsAffx.31786.1.S1_at4/1112+7503164..7504716transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g13430NANA12+7514255..7515091transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g13440Os.21284.1.S1_at11/1112+7518150..7532498Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os12g13440Os.21284.2.S1_x_at10/1112+7518150..7532498Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed
LOC_Os12g13450NANA12+7536903..7538444retrotransposon protein, putative, unclassified
LOC_Os12g13460Os.6384.1.S1_at11/1112+7543984..7551701SET domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016308molecular_function1-phosphatidylinositol-4-phosphate 5-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21284.2.S1_x_at--650--1531Chr12:7530656..7530679 (24 bp)
AGCAGGCTTGTCACCACGATGGTAT
LOC_Os12g13440
Os.21284.2.S1_x_at--314--791Chr12:7531867..7531891 (25 bp)
AGGAATGCCGTAGTCTCTTTAACCA
LOC_Os12g13440
Os.21284.2.S1_x_at--280--10071Chr12:7531877..7531901 (25 bp)
TAGTCTCTTTAACCACTGCGATGTG
LOC_Os12g13440
Os.21284.2.S1_x_at--251--6192Chr12:7531978..7532002 (25 bp)
GAGGACTGTTCTTTTTTCTCAAGGG
LOC_Os12g13440
Os.21284.2.S1_x_at--875--1031Chr12:7532079..7532103 (25 bp)
AGGTCCCCATGGTATATATTGCTTC
LOC_Os12g13440
Os.21284.2.S1_x_at--400--10231Chr12:7532095..7532119 (25 bp)
TATTGCTTCCTTGGTGATAACTCTG
LOC_Os12g13440
Os.21284.2.S1_x_at--409--8831Chr12:7532243..7532267 (25 bp)
TGATTAGTACATGCCGACTGCTGGG
LOC_Os12g13440
Os.21284.2.S1_x_at--871--4091Chr12:7532257..7532281 (25 bp)
CGACTGCTGGGCGATGGCACAGATA
LOC_Os12g13440
Os.21284.2.S1_x_at--263--8252Chr12:7532272..7532296 (25 bp)
GGCACAGATAACCACTACTTTGGGA
LOC_Os12g13440
Os.21284.2.S1_x_at--995--5471NONE
GAACTTCAGGCCTAATCGGTATAAT
NONE
Os.21284.2.S1_x_at--139--9752Chr12:7532323..7532347 (25 bp)
TAATTGTGCCTACCATTTTCTTAAT
LOC_Os12g13440
Target Sequence 
AGCAGGCTTGTCACCACGATGGTATCATATTCAAACTGAGTTTGAACTTAGTTTATCAAAGATCATTCTGATTTTCAGAA
TAACAAAGGTAACATTTTGAGGAATGCCGTAGTCTCTTTAACCACTGCGATGTGGTTACATCAACTAACAAGAATCTAAC
AGGTCCTAGAGGTGGTACAATATTTTTCAGGAGAGGAAAAAATTAAGGAAGAGGACTGTTCTTTTTTCTCAAGGGGATGA
AAATGAATTGTGACTTTCAGGACAGGATAAATTTTGTTGTTTTCCATTCAAAACAACTATGCCAGGACGGGAGGTCCCCA
TGGTATATATTGCTTCCTTGGTGATAACTCTGAAGCAAGTTGCAACACCTGAATATAAAGCATAGATTCAACAAGTTAAG
AAAAATGCAAAAGTTTTGGCAACAGCTTTGCTTAGAAGAAAATGCAGAATTGTTACTATTTTAGATGATGGAAAATGATT
AGTACATGCCGACTGCTGGGCGATGGCACAGATAACCACTACTTTGGGATTTAAGAACTTCAGGCCTAATCGGTATAATT
GTGCCTACCATTTTCTTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21284.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis