Browse Element(s) Details


Os.21292.1.S1_at

Description gb:CB681073
DB_XREF= gi:29684798
DB_XREF=OSJNEf06N21.r
CLONE=OSJNEf06N21
TID=Os.21292.1
CNT=30
FEA=FLmRNA
TIER=Stack
STK=7
UG=Os.21292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033068G01, full insert sequence
FL= gb:AK073817.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2984011/11Hsp90 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29830Os.38400.1.S1_at11/119+18140490..18143512BHLH transcription factor, putative, expressed
LOC_Os09g29840Os.21292.1.S1_at11/119+18149617..18154454Hsp90 protein, expressed
LOC_Os09g29850OsAffx.30088.2.S1_at10/119+18155178..18157500expressed protein
LOC_Os09g29860NANA9+18158819..18159112hypothetical protein
LOC_Os09g29870OsAffx.6445.1.S1_at11/119+18162203..18163292hypothetical protein
LOC_Os09g29880OsAffx.30089.1.S1_at10/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.38764.1.S1_x_at2/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.48015.1.A1_x_at2/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.23189.1.S1_at1/119+18166830..18169831hypothetical protein
LOC_Os09g29890Os.52374.1.S1_a_at11/119+18173554..18177934phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os09g29900OsAffx.28000.1.S1_at11/119+18179315..18180100hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0009408biological_processresponse to heat
GO:0009704biological_processde-etiolation
GO:0010157biological_processresponse to chlorate
GO:0046685biological_processresponse to arsenic
GO:0005739cellular_componentmitochondrion
GO:0009570cellular_componentchloroplast stroma
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21292.1.S1_at--718--1811Chr09:18150288..18150312 (25 bp)
ACGAGCCTGAAAGTACCGAAGCCAA
LOC_Os09g29840
Os.21292.1.S1_at--439--691Chr09:18150080..18150104 (25 bp)
ATGACCATCGCTCTTGGCGGGAGAT
LOC_Os09g29840
Os.21292.1.S1_at--214--4411Chr09:18150029..18150053 (25 bp)
GCCACCAGCGAATCCAACGTTGAGG
LOC_Os09g29840
Os.21292.1.S1_at--968--7131Chr09:18150000..18150024 (25 bp)
GTCTTCTGAAGGTTCCGCGACGGAA
LOC_Os09g29840
Os.21292.1.S1_at--313--5751Chr09:18149982..18150006 (25 bp)
GACGGAAGTTGTTGAGCCCTCTGAA
LOC_Os09g29840
Os.21292.1.S1_at--52--8891Chr09:18149956..18149980 (25 bp)
TGAGGCCCGAGAGTGATCCATGGAA
LOC_Os09g29840
Os.21292.1.S1_at--812--771Chr09:18149925..18149949 (25 bp)
ATGTGCTTGCAATTCTAGGCATACC
LOC_Os09g29840
Os.21292.1.S1_at--607--731Chr09:18149909..18149933 (25 bp)
AGGCATACCTTTTCTTAGCCCAAAG
LOC_Os09g29840
Os.21292.1.S1_at--1104--1511Chr09:18149874..18149898 (25 bp)
AGCAGACTGCACCACAGAAGCCAGA
LOC_Os09g29840
Os.21292.1.S1_at--619--6311Chr09:18149844..18149868 (25 bp)
GATGAACTGAGCACAAACGTCTTAG
LOC_Os09g29840
Os.21292.1.S1_at--900--10251Chr09:18149803..18149827 (25 bp)
TTTGTCATGTTTGGGTTGCCGCCAA
LOC_Os09g29840
Target Sequence 
ACGAGCCTGAAAGTACCGAAGCCAAGAGGGCCGTTGAGCTGTTGTACGAGACTGCGCTGATCTCCAGTGGATATACTCCT
GACAGCCCAGCTGAGTTGGGTGGCAAGATCTACGAGATGATGACCATCGCTCTTGGCGGGAGATGGGGAAGACCGGAGGA
GTCTGAAGCCGCCACCAGCGAATCCAACGTTGAGGTAGAGTCTTCTGAAGGTTCCGCGACGGAAGTTGTTGAGCCCTCTG
AAGTGAGGCCCGAGAGTGATCCATGGAAGGATTAATGTGCTTGCAATTCTAGGCATACCTTTTCTTAGCCCAAAGGTAGG
ATAGGAGCAGACTGCACCACAGAAGCCAGATCTATGATGAACTGAGCACAAACGTCTTAGACATTGGGTATTTGGGTTTG
TCATGTTTGGGTTGCCGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis