Browse Element(s) Details


OsAffx.6445.1.S1_at

Description tigr:9637.m02659
TID=OsAffx.6445.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2987011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29830Os.38400.1.S1_at11/119+18140490..18143512BHLH transcription factor, putative, expressed
LOC_Os09g29840Os.21292.1.S1_at11/119+18149617..18154454Hsp90 protein, expressed
LOC_Os09g29850OsAffx.30088.2.S1_at10/119+18155178..18157500expressed protein
LOC_Os09g29860NANA9+18158819..18159112hypothetical protein
LOC_Os09g29870OsAffx.6445.1.S1_at11/119+18162203..18163292hypothetical protein
LOC_Os09g29880OsAffx.30089.1.S1_at10/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.38764.1.S1_x_at2/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.48015.1.A1_x_at2/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.23189.1.S1_at1/119+18166830..18169831hypothetical protein
LOC_Os09g29890Os.52374.1.S1_a_at11/119+18173554..18177934phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os09g29900OsAffx.28000.1.S1_at11/119+18179315..18180100hypothetical protein
LOC_Os09g29910OsAffx.30091.1.S1_x_at11/119+18184100..18184582hypothetical protein
LOC_Os09g29920OsAffx.848.1.S1_at5/119+18187917..18193978retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6445.1.S1_at--837--71Chr09:18162391..18162415 (25 bp)
ATTGCGAGAAAATGCGATGCCGATA
LOC_Os09g29870
OsAffx.6445.1.S1_at--244--5511Chr09:18162529..18162553 (25 bp)
GAACACAGGTGCAAACACTGCCCAT
LOC_Os09g29870
OsAffx.6445.1.S1_at--893--2471Chr09:18162542..18162566 (25 bp)
AACACTGCCCATGTCCATGGAAATG
LOC_Os09g29870
OsAffx.6445.1.S1_at--490--1371Chr09:18162575..18162599 (25 bp)
AGAGCCGTAGATGTTGCCGTTGTCG
LOC_Os09g29870
OsAffx.6445.1.S1_at--88--8491Chr09:18162607..18162920 (25 bp)
TGGCGGCAAGCACGGAATTAAATCA
LOC_Os09g29870
OsAffx.6445.1.S1_at--150--5591Chr09:18162938..18162962 (25 bp)
GAAATGTGTCATTTCTGTTGTTCCA
LOC_Os09g29870
OsAffx.6445.1.S1_at--687--6691Chr09:18162957..18162981 (25 bp)
GTTCCAGGAGCAGCAAATCAAGAAG
LOC_Os09g29870
OsAffx.6445.1.S1_at--545--1171Chr09:18163161..18163185 (25 bp)
AGTAAGCATGACGATACTGCCGCCG
LOC_Os09g29870
OsAffx.6445.1.S1_at--468--8871Chr09:18163198..18163222 (25 bp)
TGATGAGCATGGACTACAAGACGCA
LOC_Os09g29870
OsAffx.6445.1.S1_at--413--2211Chr09:18163213..18163237 (25 bp)
ACAAGACGCAGGATGCTCGTCATCA
LOC_Os09g29870
OsAffx.6445.1.S1_at--324--631Chr09:18163225..18163249 (25 bp)
ATGCTCGTCATCATCGACCGATCAA
LOC_Os09g29870
Target Sequence 
ATTGCGAGAAAATGCGATGCCGATAACGGGTCGGAAATGGTTGAGAGGAAGGAAGGCAATGGCAGCTGCAGGTCGGCTGG
GACATGGTGGTGTGGTGGTGGTGGAAGGCAAGGGAGGAGGAGAGGAGAAGAATAAGAAGAACACAGGTGCAAACACTGCC
CATGTCCATGGAAATGGAAGCGAGAGAGCCGTAGATGTTGCCGTTGTCGGCAAGAGTGGCGGCAAGCACGGAATTAAATC
ACCTCTTAATGAGGGGCTGAAATGTGTCATTTCTGTTGTTCCAGGAGCAGCAAATCAAGAAGCAGATGCATCTGCTAAAG
CTGTAAATCATGAGGAGCCAAGTAAGCATGACGATACTGCCGCCGCGGTGTCCAGGATGATGAGCATGGACTACAAGACG
CAGGATGCTCGTCATCATCGACCGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis