Browse Element(s) Details


OsAffx.28000.1.S1_at

Description tigr:9637.m02663
TID=OsAffx.28000.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2990011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29840Os.21292.1.S1_at11/119+18149617..18154454Hsp90 protein, expressed
LOC_Os09g29850OsAffx.30088.2.S1_at10/119+18155178..18157500expressed protein
LOC_Os09g29860NANA9+18158819..18159112hypothetical protein
LOC_Os09g29870OsAffx.6445.1.S1_at11/119+18162203..18163292hypothetical protein
LOC_Os09g29880OsAffx.30089.1.S1_at10/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.38764.1.S1_x_at2/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.48015.1.A1_x_at2/119+18166830..18169831hypothetical protein
LOC_Os09g29880Os.23189.1.S1_at1/119+18166830..18169831hypothetical protein
LOC_Os09g29890Os.52374.1.S1_a_at11/119+18173554..18177934phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os09g29900OsAffx.28000.1.S1_at11/119+18179315..18180100hypothetical protein
LOC_Os09g29910OsAffx.30091.1.S1_x_at11/119+18184100..18184582hypothetical protein
LOC_Os09g29920OsAffx.848.1.S1_at5/119+18187917..18193978retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28000.1.S1_at--45--1532Chr09:18179511..18179535 (25 bp)
AGCGACCCAGGGTGGAAGAACCGCA
LOC_Os09g29900
OsAffx.28000.1.S1_at--146--3472Chr09:18179518..18179542 (25 bp)
CAGGGTGGAAGAACCGCAACCTCCG
LOC_Os09g29900
OsAffx.28000.1.S1_at--561--7472Chr09:18179522..18179546 (25 bp)
GTGGAAGAACCGCAACCTCCGATCG
LOC_Os09g29900
OsAffx.28000.1.S1_at--1140--2732Chr09:18179526..18179550 (25 bp)
AAGAACCGCAACCTCCGATCGATGG
LOC_Os09g29900
OsAffx.28000.1.S1_at--72--5452Chr09:18179528..18179552 (25 bp)
GAACCGCAACCTCCGATCGATGGGA
LOC_Os09g29900
OsAffx.28000.1.S1_at--32--7691Chr09:18179921..18179945 (25 bp)
GGGTATTTGCGTCCGACCGAGCCAA
LOC_Os09g29900
OsAffx.28000.1.S1_at--1143--10171Chr09:18179924..18179948 (25 bp)
TATTTGCGTCCGACCGAGCCAAAAA
LOC_Os09g29900
OsAffx.28000.1.S1_at--319--10651Chr09:18179927..18179951 (25 bp)
TTGCGTCCGACCGAGCCAAAAAACA
LOC_Os09g29900
OsAffx.28000.1.S1_at--619--9131Chr09:18179928..18179952 (25 bp)
TGCGTCCGACCGAGCCAAAAAACAG
LOC_Os09g29900
OsAffx.28000.1.S1_at--1072--8392Chr09:18179994..18180018 (25 bp)
GGCGCGGTGTCCATGGGCAAATATC
LOC_Os09g29900
OsAffx.28000.1.S1_at--733--4572Chr09:18179995..18180019 (25 bp)
GCGCGGTGTCCATGGGCAAATATCC
LOC_Os09g29900
Target Sequence 
AGCGACCCAGGGTGGAAGAACCGCAACCTCCGATCGATGGGACNCCCNGTGCGGCNGGCCCNCCNNCGCAGCCTTCGTTC
TTCNCCTNGCTNNNAGAGCTGGGTANCTCGGCGGCACCANCTGCACCCGCNGCGACGAGGCAGCCCGACTCCCCNTCNCC
CCATCCTNCCGCCGAGCCNTCGGTCGAGTTCTACCNCNGGTNGGCGGCGTCATCCCCTTCTTCCTCNNNGTACGAAACCG
CGNAGGATGACTGGCCGGCGCCGCCNCCGCNNNNCCACTCCCCCACCACTGGTCTNNNNNNCCTCGCNNGATTCANCCTA
CACCGAGTCTTCCCCTGNNCGCGATCGCTTCGGCGAGGAGGAGGGNTCGCACGCNGCACCCGAGCCGCCGCCGCTGNCNC
CATCGGAGATAAGGCCAAGGGGTATTTGCGTCCGACCGAGCCAAAAAACAGCCTCTCGTCTGCCACGTCAGCAAGTCAAG
TGGAGAGGAGACGGCGCGGTGTCCATGGGCAAATATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis