Browse Element(s) Details


Os.21345.1.S1_at

Description gb:AK101277.1
DB_XREF= gi:32986486
TID=Os.21345.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21345 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033033C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033033C01, full insert sequence.
FL= gb:AK101277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3642011/11sialyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36390Os.25752.1.S1_at11/1111+20941735..20951593BRCA1 C Terminus domain containing protein, expressed
LOC_Os11g36400Os.56294.1.S1_at11/1111+20961065..20963169expressed protein
LOC_Os11g36410OsAffx.31324.1.S1_at11/1111+20967756..20970788NB-ARC domain containing protein
LOC_Os11g36420Os.21345.1.S1_at11/1111+20974391..20978324sialyltransferase, putative, expressed
LOC_Os11g36430Os.8445.1.S1_at11/1111+20978869..20983802RING-H2 finger protein RHF2a, putative, expressed
LOC_Os11g36440OsAffx.7314.1.S1_at11/1111+20984661..20988746carotenoid isomerase, putative, expressed
LOC_Os11g36450Os.35279.1.S1_at11/1111+20989245..20991948transcription factor jumonji, putative, expressed
LOC_Os11g36460NANA11+20993247..20994542Structural maintenance of chromosome 5, putative
LOC_Os11g36470Os.50923.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.31325.1.S1_at11/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.21343.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470Os.50936.1.S1_x_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os11g36470OsAffx.10335.1.S1_at1/1111+20995744..21014944Ubiquitin carboxyl-terminal hydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0008373molecular_functionsialyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21345.1.S1_at--721--8011Chr11:20977788..20977812 (25 bp)
GGAGGTACTCCCATTCGACAGCTTA
LOC_Os11g36420
Os.21345.1.S1_at--1112--791Chr11:20977843..20977867 (25 bp)
ATGGGCGGCGTATCTCTGTACAAGA
LOC_Os11g36420
Os.21345.1.S1_at--604--3411Chr11:20977929..20977953 (25 bp)
CAGCACTTAATCTTTGCCTGGAGAT
LOC_Os11g36420
Os.21345.1.S1_at--696--1311Chr11:20977950..20977974 (25 bp)
AGATGGCATCTTGACCCTGTGGTAA
LOC_Os11g36420
Os.21345.1.S1_at--105--6212Chr11:20977981..20978005 (25 bp)
GAGGCATATCTACTTGTCAGTTGTA
LOC_Os11g36420
Os.21345.1.S1_at--878--6191Chr11:20978028..20978052 (25 bp)
GAGGCTATTCTTTAGGGTTTCTCAT
LOC_Os11g36420
Os.21345.1.S1_at--204--6711Chr11:20978129..20978153 (25 bp)
GTTCCGCTATGGGTACAGCTGTAAC
LOC_Os11g36420
Os.21345.1.S1_at--994--4731Chr11:20978146..20978170 (25 bp)
GCTGTAACGATTTTGGTGCCACTTG
LOC_Os11g36420
Os.21345.1.S1_at--922--7271Chr11:20978161..20978185 (25 bp)
GTGCCACTTGCAACATGTACTAGCC
LOC_Os11g36420
Os.21345.1.S1_at--617--7011Chr11:20978177..20978201 (25 bp)
GTACTAGCCATCACGCAATTCTGAA
LOC_Os11g36420
Os.21345.1.S1_at--720--10711Chr11:20978216..20978240 (25 bp)
TTGAGCTAGTAACCTACACCCTGAA
LOC_Os11g36420
Target Sequence 
GGAGGTACTCCCATTCGACAGCTTACGAATGGAGGCTCAGGAACACCATGTCCAGATGGGCGGCGTATCTCTGTACAAGA
TGGATGGAAACAAGCTAGATGATCTTGTTTGTGTGAGACATGAACGTTCATCTAGTTAAGTCAGCACTTAATCTTTGCCT
GGAGATGGCATCTTGACCCTGTGGTAATCTTCAGAGGCATATCTACTTGTCAGTTGTAAGATCACAAGAGGCAAAGGATT
GAGGCTATTCTTTAGGGTTTCTCATTCCCCTGACAGAAAATATTCTTTTATTGGTTTCTTAGCGACTTTGTAGGGATATT
TGCTTAATCAGTCGGAAGAATGTTCCGCTATGGGTACAGCTGTAACGATTTTGGTGCCACTTGCAACATGTACTAGCCAT
CACGCAATTCTGAACTGCAGTTTTGTTGTTGAGCTAGTAACCTACACCCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis