Browse Element(s) Details


Os.21349.1.S1_at

Description gb:AK099870.1
DB_XREF= gi:32985079
TID=Os.21349.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.21349 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) expansin-like protein A mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111F04, full insert sequence.
FL= gb:AK099870.1 gb:AK061453.1 gb:AK067081.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0402011/11Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03949Os.15751.1.S1_at11/113+1782819..1791636expressed protein
LOC_Os03g03949Os.45957.4.S1_x_at1/113+1782819..1791636expressed protein
LOC_Os03g03970NANA3+1791816..1792184retrotransposon protein, putative, unclassified
LOC_Os03g03980OsAffx.24957.1.S1_at11/113+1793782..1794833expressed protein
LOC_Os03g03990Os.16968.1.S1_at10/113+1795856..1797181'chromo' domain containing protein, expressed
LOC_Os03g04000Os.18327.1.S1_at11/113+1800611..1804371AMP-binding enzyme family protein, expressed
LOC_Os03g04010OsAffx.24958.1.S1_at11/113+1805566..1805960hypothetical protein
LOC_Os03g04020Os.21349.1.S1_at11/113+1809675..1811413Rare lipoprotein A like double-psi beta-barrel containing protein, expressed
LOC_Os03g04030Os.52180.1.S1_at11/113+1814950..1818869HVA22-like protein i, putative, expressed
LOC_Os03g04040NANA3+1823179..1824168hypothetical protein
LOC_Os03g04050Os.23253.1.S1_at11/113+1831985..1836891protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009664biological_processcell wall organization and biogenesis (sensu Magnoliophyta)
GO:0009826biological_processunidimensional cell growth
GO:0009828biological_processcell wall loosening (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21349.1.S1_at--753--1171Chr03:1810697..1810721 (25 bp)
AGTACAGGCACAGGAGCCTCTCTGT
LOC_Os03g04020
Os.21349.1.S1_at--403--971Chr03:1810708..1810732 (25 bp)
AGGAGCCTCTCTGTCAGAGTCGACG
LOC_Os03g04020
Os.21349.1.S1_at--1099--1291Chr03:1810733..1810757 (25 bp)
AGAGAAGTCGCGGACCCAACGAGCT
LOC_Os03g04020
Os.21349.1.S1_at--734--1271Chr03:1811098..1811122 (25 bp)
AGATCACTGACATCGCCCAGGAAGG
LOC_Os03g04020
Os.21349.1.S1_at--841--9491Chr03:1811176..1811200 (25 bp)
TCTCCTGTCGTCACGGCCATTTTGG
LOC_Os03g04020
Os.21349.1.S1_at--576--5551Chr03:1811215..1811239 (25 bp)
GAAAGAAGACGTCTCTCGGCTCGCC
LOC_Os03g04020
Os.21349.1.S1_at--292--1171Chr03:1811243..1811267 (25 bp)
AGTAGAGATTTCACTGACCCGATTT
LOC_Os03g04020
Os.21349.1.S1_at--891--8911Chr03:1811257..1811281 (25 bp)
TGACCCGATTTAGAGTCCTCCTAAT
LOC_Os03g04020
Os.21349.1.S1_at--922--9751Chr03:1811278..1811302 (25 bp)
TAATCCCTCGGCAACTTCAGAATTT
LOC_Os03g04020
Os.21349.1.S1_at--486--10511Chr03:1811293..1811317 (25 bp)
TTCAGAATTTCCTCCTCCGTTTCTT
LOC_Os03g04020
Os.21349.1.S1_at--505--10291Chr03:1811326..1811350 (25 bp)
TTTCCAACTTTGTACATGAGCTACT
LOC_Os03g04020
Target Sequence 
AGTACAGGCACAGGAGCCTCTCTGTCAGAGTCGACGAGAGAAGTCGCGGACCCAACGAGCTCACCATCAGCTTCCTCTAC
CAAGGCGGCCAAACCGACATCGTCGCCGTCGACGTCGCCCAGGTTGGGTCGTCGAGCTGGAAGTTCATGACGAGGGAGCA
CGGACCGTCGTGGAGCATGGCGAACGCGCCGCCGGGGCCGCTGCAGATGAGGCTGGTGGTGACCGGCGGCTACGACGGGA
AGTGGGTGTGGGCCGACCGGGAGGTCCTGCCGAGGCGGTGGCGCGCCGGCGAGGTCTACGACACGGGGGTCCAGATCACT
GACATCGCCCAGGAAGGCTGCTTCCCCTGCGACACGCACGAGTGGAAGTAGAAGCCCAGCCACACGTACTTCTCCTGTCG
TCACGGCCATTTTGGTTGGGCTTTGATGAGAAAGAAGACGTCTCTCGGCTCGCCTCCAGTAGAGATTTCACTGACCCGAT
TTAGAGTCCTCCTAATCCCTCGGCAACTTCAGAATTTCCTCCTCCGTTTCTTCTTCTTCTTTTCCAACTTTGTACATGAG
CTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21349.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis