Browse Element(s) Details


Os.21368.1.A1_at

Description gb:AK073388.1
DB_XREF= gi:32983411
TID=Os.21368.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.21368 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033043F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033043F13, full insert sequence.
FL= gb:AK073388.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5980011/11Vacuolar protein sorting 36 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59740Os.7103.1.S1_at11/111+34885058..34886784expressed protein
LOC_Os01g59750OsAffx.23859.1.S1_at10/111+34887517..3489115214 kDa zinc-binding protein, putative, expressed
LOC_Os01g59760Os.42200.1.S1_at10/111+34892143..34895139bZIP transcription factor family protein, expressed
LOC_Os01g59770NANA1+34896958..34897269hypothetical protein
LOC_Os01g59780OsAffx.21654.1.S1_at11/111+34901681..34904452AP2 domain containing protein, expressed
LOC_Os01g59780OsAffx.21654.1.S1_x_at11/111+34901681..34904452AP2 domain containing protein, expressed
LOC_Os01g59790Os.12144.1.S1_a_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59790Os.12144.2.S1_x_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59800Os.21368.1.A1_at11/111+34910742..34913959Vacuolar protein sorting 36 containing protein, expressed
LOC_Os01g59819Os.55138.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819OsAffx.20707.2.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.55476.1.S1_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.51558.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59840Os.51558.1.S1_x_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840Os.51558.1.S1_at11/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os01g59840OsAffx.1874.1.S1_at1/111+34934259..34937859Cyanogenic beta-glucosidase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21368.1.A1_at--322--4631Chr01:34911581..34911605 (25 bp)
GCGATGCTGCATTTACACTTGGGAT
LOC_Os01g59800
Os.21368.1.A1_at--1--10851Chr01:34911563..34911587 (25 bp)
TTGGGATTGCACCTGCTTTAGCGAA
LOC_Os01g59800
Os.21368.1.A1_at--335--2351Chr01:34911433..34911542 (25 bp)
AAAGCATTGGTATCCTTTGCAGGGA
LOC_Os01g59800
Os.21368.1.A1_at--825--751Chr01:34911409..34911433 (25 bp)
ATGTCAGTCCAGATGGGTTGCGCTT
LOC_Os01g59800
Os.21368.1.A1_at--509--7911Chr01:34911394..34911418 (25 bp)
GGTTGCGCTTCTACATCAATCTATT
LOC_Os01g59800
Os.21368.1.A1_at--629--8571Chr01:34911118..34911142 (25 bp)
TGGATATCTGTCACGGCAGCATCAC
LOC_Os01g59800
Os.21368.1.A1_at--222--4971Chr01:34911100..34911124 (25 bp)
GCATCACAGTGACTTATCTTCGGTT
LOC_Os01g59800
Os.21368.1.A1_at--501--1591Chr01:34911058..34911082 (25 bp)
AGCTCGGCAGTTCGTATCAATGTTC
LOC_Os01g59800
Os.21368.1.A1_at--59--9491Chr01:34911017..34911041 (25 bp)
TCTGCCGTGACGACTTTGTACAACA
LOC_Os01g59800
Os.21368.1.A1_at--718--1391Chr01:34910935..34910959 (25 bp)
AGACGTGACTGCCTTTCTTAAACAG
LOC_Os01g59800
Os.21368.1.A1_at--980--2631Chr01:34910841..34910865 (25 bp)
AACCTTTTATCTTTGCCAGTCATTA
LOC_Os01g59800
Target Sequence 
GCGATGCTGCATTTACACTTGGGATTGCACCTGCTTTAGCGAAGGAGCATCTTCTAAATGCAGAAAGCATTGGTATCCTT
TGCAGGGATGTCAGTCCAGATGGGTTGCGCTTCTACATCAATCTATTTAATGAAATTGATCCCCNAAATATGTATATGCC
AAAAACTCATGGAGTATACCACACATGGATATCTGTCACGGCAGCATCACAGTGACTTATCTTCGGTTGATTGGGGAGCA
TGACGAGCTCGGCAGTTCGTATCAATGTTCAGTTTTGTCTGCATATTCTGCCGTGACGACTTTGTACAACACCCCAAAGC
GTGGTGTAACAAATTCATTAGTATTTGCTTGAATGAATGACTTGCATAAGACGTGACTGCCTTTCTTAAACAGAAGAGGT
GATGCTTTGAATTAGCTTTTGCTTGTCTTTCCGTCAAGCAAAGACATGTAATGATCTGAGGCAACCTTTTATCTTTGCCA
GTCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21368.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis