Browse Element(s) Details


Os.21390.1.S1_at

Description gb:AK106845.1
DB_XREF= gi:32992054
TID=Os.21390.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21390 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-118-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-118-A01, full insert sequence.
FL= gb:AK106845.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4288010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42840OsAffx.31447.1.S1_at10/1111+25298367..25303229hypothetical protein
LOC_Os11g42840Os.51348.1.S1_x_at1/1111+25298367..25303229hypothetical protein
LOC_Os11g42850Os.53511.1.S1_at11/1111+25304928..25309114expressed protein
LOC_Os11g42860OsAffx.23514.2.S1_at10/1111+25310195..25316745hypothetical protein
LOC_Os11g42870OsAffx.31448.1.S1_at11/1111+25321520..25321986hypothetical protein
LOC_Os11g42880Os.21390.1.S1_at10/1111+25327951..25332150expressed protein
LOC_Os11g42890OsAffx.31449.1.S1_at11/1111+25333252..25337274hypothetical protein
LOC_Os11g42900OsAffx.23514.3.S1_at11/1111+25339318..25345715hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21390.1.S1_at--69--8171Chr11:25331599..25331729 (25 bp)
GGAAAAGCTGATCTTGCGGGACATC
LOC_Os11g42880
Os.21390.1.S1_at--448--9571Chr11:25331610..25331740 (25 bp)
TCTTGCGGGACATCAATATCACCTT
LOC_Os11g42880
Os.21390.1.S1_at--80--251Chr11:25331731..25331755 (25 bp)
ATATCACCTTGAACTTTGCCACCAG
LOC_Os11g42880
Os.21390.1.S1_at--148--9211Chr11:25331747..25331771 (25 bp)
TGCCACCAGTGTTTCCATGTGGAAA
LOC_Os11g42880
Os.21390.1.S1_at--1042--2331Chr11:25331818..25331842 (25 bp)
AAAGCATGATTCAGATGAGTGGTCT
LOC_Os11g42880
Os.21390.1.S1_at--662--7491Chr11:25331836..25331860 (25 bp)
GTGGTCTGAGTCAATGTATTTTGCT
LOC_Os11g42880
Os.21390.1.S1_at--554--2451Chr11:25331884..25331908 (25 bp)
AAAATATTACTTCTGCTGTCCCTTG
LOC_Os11g42880
Os.21390.1.S1_at--439--3871Chr11:25331899..25331923 (25 bp)
CTGTCCCTTGGAACCACGTGAGAAT
LOC_Os11g42880
Os.21390.1.S1_at--487--1911Chr11:25331914..25332042 (25 bp)
ACGTGAGAATGGTCACTGTTATGCA
LOC_Os11g42880
Os.21390.1.S1_at--741--5831Chr11:25332064..25332088 (25 bp)
GACCTGAGGCTGAGGCATCCAGCTA
LOC_Os11g42880
Os.21390.1.S1_at--134--6871Chr11:25332309..25332333 (25 bp)
GTTTGTCTGACAGTATTGTGATGAA
NONE
Target Sequence 
GGAAAAGCTGATCTTGCGGGACATCAATATCACCTTGAACTTTGCCACCAGTGTTTCCATGTGGAAAGCTATTTCCAAAA
TTTCCACCATTATAATTTTAATGTCAAGATAAAAAAGCATGATTCAGATGAGTGGTCTGAGTCAATGTATTTTGCTGAAG
TAAAGATGATATTNAGGAGAAAATATTACTTCTGCTGTCCCTTGGAACCACGTGAGAATGGTCACTGTTATGCATGCAGA
AACCAAGGAATGGATGACCTGAGGCTGAGGCATCCAGCTACAGGTGGATTTGAGATGGGCTCACCTGACACTGTATTTCC
TTACATGTATACCNGTGNCTGAGCTCGTGTTACCCNAAAAAGATNTGTATATGGATGATGGTTTGGAGTAATCACTTAGA
TTATCATGATNTGTTGGATGCTGACATAGTTTNTTTTCAGCAGCACTATTTCGCTCNCAACACTTGTTGTAGTACTGAAG
NTCTAAAATATTGTGCANCTCGTTTGTCTGACAGTATTGTGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21390.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis