Browse Element(s) Details


Os.21454.1.S1_at

Description gb:BQ909135
DB_XREF= gi:22307913
DB_XREF=T021G12
CLONE=T021G12
TID=Os.21454.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.21454 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g164001/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g16370Os.15410.1.S1_at11/1111+9012155..9020566uridine kinase family protein, expressed
LOC_Os11g16380NANA11+9024529..9024792hypothetical protein
LOC_Os11g16390Os.10906.1.S1_at11/1111+9033734..9037297expressed protein
LOC_Os11g16400Os.21454.1.S1_at1/1111+9043090..9046890expressed protein
LOC_Os11g16410Os.11370.1.S1_at10/1111+9051714..9056773oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g16420Os.24606.1.S1_at11/1111+9057133..9063300ProFAR isomerase associated family protein, expressed
LOC_Os11g16430OsAffx.7123.1.S1_at11/1111+9067434..9073083diphthamide biosynthesis protein 2 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21454.1.S1_at--315--551Chr02:2207958..2207982 (25 bp)
ATCCCTGTCTTATTTTGCGTCCATT
NONE
Os.21454.1.S1_at--493--2531Chr02:2207881..2207905 (25 bp)
AACTATCATCAAATCCGTGGCCTAA
NONE
Os.21454.1.S1_at--121--931Chr02:2207855..2207879 (25 bp)
AGGCTATGCGCCGAATTCAGTGTAG
NONE
Os.21454.1.S1_at--360--7611Chr02:2207809..2207833 (25 bp)
GGGCAAATGCTCCTCAGAATATTTC
NONE
Os.21454.1.S1_at--443--5232Chr11:9045638..9045865 (25 bp)
GAATATTTCTTTTCCTCTTTTGATA
LOC_Os11g16400
Os.21454.1.S1_at--137--1691Chr02:2207722..2207746 (25 bp)
ACTTACCTAGAGCTGTTAACGAGTT
NONE
Os.21454.1.S1_at--401--2511Chr02:2207653..2207677 (25 bp)
AACATTTGCCCTAACTGTTCTTGGG
NONE
Os.21454.1.S1_at--570--7911Chr02:2207629..2207653 (25 bp)
GGTTGTTCAAGCCTCTATTAAGATC
NONE
Os.21454.1.S1_at--867--10291Chr02:2207564..2207588 (25 bp)
TTTCCTTCTTTATCCTGTCATCTTC
NONE
Os.21454.1.S1_at--78--10591Chr02:2207542..2207566 (25 bp)
TTCTCTGCCAATCAATCAATTTCTG
NONE
Os.21454.1.S1_at--431--1272Chr02:2207511..2207535 (25 bp)
AGATAGTTTGTTTCACATCATCACA
NONE
Target Sequence 
ATCCCTGTCTTATTTTGCGTCCATTATGAATTCAGAATGGGATCAGAAGAGATGCAATGGCTACNNAAAACCCAGCATAA
CTATCATCAAATCCGTGGCCTAAAAGGCTATGCGCCGAATTCAGTGTAGAGTGTCAGCTTATAGCTGGGAGGGCAAATGC
TCCTCAGAATATTTCTTTTCCTCTTTTGATATATTGTGTAGTTTTTGCATTTGCANAAANGTTAGAGATAAGAATGGAAC
TTACCTAGAGCTGTTAACGAGTTGAGACAGGGTTTAGGCGAAATTTAAGATAGTGTATTTTAGAGAAAACATTTGCCCTA
ACTGTTCTTGGGGTTGTTCAAGCCTCTATTAAGATCAGACCCAGATTAGAAACCACTATAGNCAAATNTTCTGCACCTTT
CCTTCTTTATCCTGTCATCTTCTCTGCCAATCAATCAATTTCTGAATTGAAGATAGTTTGTTTCACATCATCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis