Browse Element(s) Details


Os.21491.1.S1_at

Description gb:AK073440.1
DB_XREF= gi:32983463
TID=Os.21491.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21491 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative indole-3-glycerol phosphate lyase (OSJNBa0094F01.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046F03, full insert sequence.
FL= gb:AK073440.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5826011/11Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58230Os.10490.1.S1_at11/113+33108780..33111030uncharacterized plant-specific domain TIGR01615 family protein, expressed
LOC_Os03g58240Os.28405.2.S1_at11/113+33120283..33126124guanylate-binding family protein, putative, expressed
LOC_Os03g58240Os.28405.1.S1_x_at3/113+33120283..33126124guanylate-binding family protein, putative, expressed
LOC_Os03g58250Os.136.1.S1_a_at11/113+33126247..33130722bZIP transcription factor family protein, expressed
LOC_Os03g58260OsAffx.13539.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58260Os.21491.1.S1_x_at11/113+33132669..33137012Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58270Os.54735.1.S1_at1/113+33138144..33142211retrotransposon protein, putative, unclassified
LOC_Os03g58280OsAffx.10418.1.S1_at5/113+33143525..33146100hypothetical protein
LOC_Os03g58290NANA3+33147045..33149334Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed
LOC_Os03g58300Os.14079.1.S1_at11/113+33153467..33156352Indole-3-glycerol phosphate lyase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004834molecular_functiontryptophan synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21491.1.S1_at--533--3571Chr03:33133650..33133674 (25 bp)
CATAGCATTTTAATCCAGTATTTTC
LOC_Os03g58260
Os.21491.1.S1_at--2--591Chr03:33133638..33133662 (25 bp)
ATCCAGTATTTTCTTGTATGATTCA
LOC_Os03g58260
Os.21491.1.S1_at--1115--5231Chr03:33133612..33133636 (25 bp)
GAATCATGACTGTATCTCACTCTAG
LOC_Os03g58260
Os.21491.1.S1_at--32--691Chr03:33133607..33133631 (25 bp)
ATGACTGTATCTCACTCTAGTACTA
LOC_Os03g58260
Os.21491.1.S1_at--740--3871Chr03:33133603..33133627 (25 bp)
CTGTATCTCACTCTAGTACTATCCT
LOC_Os03g58260
Os.21491.1.S1_at--479--451Chr03:33133599..33133623 (25 bp)
ATCTCACTCTAGTACTATCCTTCTG
LOC_Os03g58260
Os.21491.1.S1_at--119--1991Chr03:33133594..33133618 (25 bp)
ACTCTAGTACTATCCTTCTGTTAAC
LOC_Os03g58260
Os.21491.1.S1_at--577--1171Chr03:33133589..33133613 (25 bp)
AGTACTATCCTTCTGTTAACATACA
LOC_Os03g58260
Os.21491.1.S1_at--732--571Chr03:33133583..33133607 (25 bp)
ATCCTTCTGTTAACATACAGATGAA
LOC_Os03g58260
Os.21491.1.S1_at--973--9291Chr03:33133506..33133530 (25 bp)
TCTCCAATTTTGTAAGTTCATAAAT
LOC_Os03g58260
Os.21491.1.S1_at--294--5051Chr03:33133410..33133454 (25 bp)
GCAGAACATATTAGGCTCTTGTTGT
LOC_Os03g58260
Target Sequence 
CATAGCATTTTAATCCAGTATTTTCTTGTATGATTCATGAATCATGACTGTATCTCACTCTAGTACTATCCTTCTGTTAA
CATACAGATGAATAATAAAGAAGGTAGCTCAGAAACTGTCTGAAATAGCTGTCCCAGAATTGCATCTCCAATTTTGTAAG
TTCATAAATAAAATCCAATGAACATTNATGGAGTAGTANNTCAGGAGAAATTAATATGCAGAACATATTAGGCTCTTGTT
GT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis