Browse Element(s) Details


Os.21636.2.S1_a_at

Description gb:AK111740.1
DB_XREF= gi:37988403
TID=Os.21636.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21636 (NCBI UniGene Cluster)
UG_TITLE=MRNA for Myb15 protein (myb15 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023047I22, full insert sequence.
FL= gb:AK106039.1 gb:AK111740.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3625011/11ODORANT1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36230OsAffx.18064.1.S1_at1/119+20894431..20896238hypothetical protein
LOC_Os09g36240Os.28421.1.S1_at11/119+20897102..20907998deoxyribodipyrimidine photolyase family protein, expressed
LOC_Os09g36240OsAffx.18064.1.S1_at6/119+20897102..20907998deoxyribodipyrimidine photolyase family protein, expressed
LOC_Os09g36250Os.21636.1.S2_a_at11/119+20914938..20919327ODORANT1 protein, putative, expressed
LOC_Os09g36250Os.21636.2.S1_a_at11/119+20914938..20919327ODORANT1 protein, putative, expressed
LOC_Os09g36260NANA9+20920528..20921690hypothetical protein
LOC_Os09g36270Os.23137.1.S1_at10/119+20928304..20937909Pantothenate kinase 2, putative, expressed
LOC_Os09g36280OsAffx.18009.1.S1_s_at11/119+20938076..20939241Glycosyl hydrolases family 17 protein, expressed
LOC_Os09g36290Os.12157.1.S1_at11/119+20942013..20945412Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21636.2.S1_a_at--837--851Chr09:20915526..20915550 (25 bp)
ATGGCTCAATTTCACGGCCAGCAAC
LOC_Os09g36250
Os.21636.2.S1_a_at--299--1411Chr09:20915391..20915415 (25 bp)
AGACTCGAGCTTGGTGGTCGATGCC
LOC_Os09g36250
Os.21636.2.S1_a_at--1057--8591Chr09:20915377..20915401 (25 bp)
TGGTCGATGCCTCCATGGTCAACAG
LOC_Os09g36250
Os.21636.2.S1_a_at--502--9711Chr09:20915359..20915383 (25 bp)
TCAACAGCTCAAATGGGTCCAACTT
LOC_Os09g36250
Os.21636.2.S1_a_at--1028--2291Chr09:20915349..20915373 (25 bp)
AAATGGGTCCAACTTCTAGCTAGAA
LOC_Os09g36250
Os.21636.2.S1_a_at--784--4851Chr09:20915331..20915355 (25 bp)
GCTAGAAGATGTCAGCAGCTTACTT
LOC_Os09g36250
Os.21636.2.S1_a_at--729--4891Chr09:20915314..20915338 (25 bp)
GCTTACTTAATTGTGTTGCTATCAG
LOC_Os09g36250
Os.21636.2.S1_a_at--1154--2311Chr09:20915240..20915264 (25 bp)
AAAGCAGCTAGGCATGGCCGGCCAA
LOC_Os09g36250
Os.21636.2.S1_a_at--967--7311Chr09:20915122..20915146 (25 bp)
GTGCATGTTGTTGTGTATTTTCCCC
LOC_Os09g36250
Os.21636.2.S1_a_at--1043--6871Chr09:20915108..20915132 (25 bp)
GTATTTTCCCCTTGAGATTGATTCG
LOC_Os09g36250
Os.21636.2.S1_a_at--447--7871Chr09:20915081..20915105 (25 bp)
GGTTTGTGCCATTAACTAGAAGTGT
LOC_Os09g36250
Target Sequence 
ATGGCTCAATTTCACGGCCAGCAACGACGTCGACGAGTTCAGTAGCATCGCCGCCACCGGCGCCACGCCGGCGCTGCCGT
GGGACGTCGGCATGACGACGGACTGGNTGCTCGACTACCAAGATTTTGGGATGGGAGACTCGAGCTTGGTGGTCGATGCC
TCCATGGTCAACAGCTCAAATGGGTCCAACTTCTAGCTAGAAGATGTCAGCAGCTTACTTAATTGTGTTGCTATCAGTGT
AGATAATCAAGTGAAGTGTATAATTAATAAAAGCATCAAGATTGTGAAAGCAGCTAGGCATGGCCGGCCAAGATCGGAGG
GTGATCACAAGTCGAGGCCTTTGCTCTTCGGAAAACCAATCAACGGTTGGGATTGATGCATTTGAGAGAGGGTATGCGTA
GATGGTGCATGTTGTTGTGTATTTTCCCCTTGAGATTGATTCGGGGGTTTGTGCCATTAACTAGAAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21636.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis