Browse Element(s) Details


Os.21794.1.S1_s_at

Description gb:CA756597
DB_XREF= gi:25800636
DB_XREF=BR050002001E04.ab1
CLONE=BR050002001E04.ab1
TID=Os.21794.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.21794 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4200011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41970OsAffx.19319.1.S1_s_at6/1111+24733468..24733837hypothetical protein
LOC_Os11g41990Os.9625.1.S1_at11/1111+24744447..24750958Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os11g42000Os.21794.1.S1_s_at11/1111+24756597..24761219expressed protein
LOC_Os11g42000OsAffx.19321.1.S1_at11/1111+24756597..24761219expressed protein
LOC_Os11g42010OsAffx.19322.1.S1_at11/1111+24761902..24762922Leucine Rich Repeat family protein
LOC_Os11g42020NANA11+24766013..24766348hypothetical protein
LOC_Os11g42030Os.54118.1.A1_at11/1111+24774737..24777012expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21794.1.S1_s_at--153--6071Chr11:24760886..24760910 (25 bp)
GAGTTCCTTGAAGGCATGTTCCCTT
LOC_Os11g42000
Os.21794.1.S1_s_at--617--731Chr11:24760901..24760925 (25 bp)
ATGTTCCCTTGATCTGGCCTTTATG
LOC_Os11g42000
Os.21794.1.S1_s_at--53--3631Chr11:24760908..24760932 (25 bp)
CTTGATCTGGCCTTTATGTCAAAAT
LOC_Os11g42000
Os.21794.1.S1_s_at--15--7611Chr11:24760945..24760969 (25 bp)
GGGAAGCGGCACCTGTTTAATCTTC
LOC_Os11g42000
Os.21794.1.S1_s_at--203--8251Chr11:24760952..24760976 (25 bp)
GGCACCTGTTTAATCTTCCATGACA
LOC_Os11g42000
Os.21794.1.S1_s_at--611--9231Chr11:24760968..24760992 (25 bp)
TCCATGACATGTTAATACTGAACGT
LOC_Os11g42000
Os.21794.1.S1_s_at--678--5451Chr11:24760987..24761011 (25 bp)
GAACGTGATTAATTGTAACTTTGTA
LOC_Os11g42000
Os.21794.1.S1_s_at--1130--7731Chr11:24761018..24761042 (25 bp)
GGTGTATTACTGCTAGTTGTTCCAT
LOC_Os11g42000
Os.21794.1.S1_s_at--1100--10031Chr11:24761031..24761055 (25 bp)
TAGTTGTTCCATTTCTAGCCTCTAG
LOC_Os11g42000
Os.21794.1.S1_s_at--902--9971Chr11:24761046..24761070 (25 bp)
TAGCCTCTAGGTCTCTTGTGAGTTC
LOC_Os11g42000
Os.21794.1.S1_s_at--222--5391Chr11:24761144..24761168 (25 bp)
GAAGCACCTTGAATGTTATTTATAT
LOC_Os11g42000
Target Sequence 
GAGTTCCTTGAAGGCATGTTCCCTTGATCTGGCCTTTATGTCAAAATCATCATCAGAAGGGGAAGCGGCACCTGTTTAAT
CTTCCATGACATGTTAATACTGAACGTGATTAATTGTAACTTTGTATATGATGGTGTATTACTGCTAGTTGTTCCATTTC
TAGCCTCTAGGTCTCTTGTGAGTTCTGAGATGTGAGAACTGCCAGNNNNNNGTGNTGTCTAACTAATGAATTNGTCACCN
CCTGCTCTTAATCNGTNATAGNTTGAAGCACCTTGAATGTTATTTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21794.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis