Browse Element(s) Details


Os.21809.1.S1_at

Description gb:AK067921.1
DB_XREF= gi:32977939
TID=Os.21809.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21809 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013124G12, full insert sequence.
FL= gb:AK067921.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g074909/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07470Os.52668.1.S1_at11/1111+3778504..3784995expressed protein
LOC_Os11g07480Os.54544.1.S1_at11/1111+3785243..3789715WD-repeat protein 20, putative, expressed
LOC_Os11g07490Os.21809.1.S1_at9/1111+3791883..3797010RNA recognition motif family protein, expressed
LOC_Os11g07500Os.14143.1.S1_at11/1111+3797426..3804489DEAD/DEAH box helicase family protein, expressed
LOC_Os11g07510OsAffx.7036.1.S1_at11/1111+3804768..3808515Plant protein family protein
LOC_Os11g07520NANA11+3809206..3811755retrotransposon protein, putative, unclassified
LOC_Os11g07530OsAffx.30864.1.S1_at10/1111+3813721..3815661hypothetical protein
LOC_Os11g07540OsAffx.7037.1.S1_at11/1111+3817727..3819518hypothetical protein
LOC_Os11g07550OsAffx.30864.2.S1_at10/1111+3820417..3822034hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21809.1.S1_at--732--2851Chr11:3796424..3796448 (25 bp)
AAGTCCTACAACTGACACCTGAGCA
LOC_Os11g07490
Os.21809.1.S1_at--1027--5931Chr11:3796444..3796468 (25 bp)
GAGCAGCTTAGTTCGTTGCCAGTAG
LOC_Os11g07490
Os.21809.1.S1_at--835--6331Chr11:3796500..3796524 (25 bp)
GATGCTATCGGCTGGTAAATAACCC
LOC_Os11g07490
Os.21809.1.S1_at--854--3891Chr11:3796603..3796627 (25 bp)
CTGGGCGCATATGTCAACGGTTGAT
LOC_Os11g07490
Os.21809.1.S1_at--917--5511Chr11:3796729..3796753 (25 bp)
GAAAAGGCCTCTTATTGTCCATCAC
LOC_Os11g07490
Os.21809.1.S1_at--60--6831Chr11:3796863..3796887 (25 bp)
GTTTAGTTTGCTGTGTAATCTCCCA
LOC_Os11g07490
Os.21809.1.S1_at--520--4971Chr11:3796888..3796912 (25 bp)
GCATCTTACTTTCTCTGTAGCTGTT
LOC_Os11g07490
Os.21809.1.S1_at--971--9511Chr11:3796916..3796940 (25 bp)
TCTCTCCCGGACTACATGTTTTGAA
LOC_Os11g07490
Os.21809.1.S1_at--808--6511Chr11:3796953..3796977 (25 bp)
GATATTCGATTATTGCTGCTGCTTG
LOC_Os11g07490
Os.21809.1.S1_at--861--4771NONE
GCTGCTGCTTGATTCATTTACTACA
NONE
Os.21809.1.S1_at--879--9851Chr11:3796988..3797012 (25 bp)
TACAGCCTGTGAGCGACTTTTGGAA
NONE
Target Sequence 
AAGTCCTACAACTGACACCTGAGCAGCTTAGTTCGTTGCCAGTAGAGCAACAACAGCAGGTGATTCAGCTTCAAAAGATG
CTATCGGCTGGTAAATAACCCCCATCTGAATCAGCATACCAAATTGTTGATCAAGCTATACAGAGTTGTGGAAAAAATGG
TACATTTGTGAAGAAGAAACTGGGCGCATATGTCAACGGTTGATTTTGCCAAGCCACACCACCACACTTGTAACTTTGAA
AATTGTTGGCATTTNNGGGCCATTAGTTTTGCTNANGAGCATTCTTTGGAGATAAAATGTGATGGGAAAAGGCCTCTTAT
TGTCCATCACTTATGTATCATTATAGAAAAAAAGAATAATCTGTATCCATTTTTCTCATGTAATCTGTAGTGCAAGAACA
ATTTTGTCTTTAGAACTCTCTTAAAAGTAGTCCANAGCTGTTTAGTTTGCTGTGTAATCTCCCAGCATCTTACTTTCTCT
GTAGCTGTTTCTTCTCTCCCGGACTACATGTTTTGAAGTTAGTTGCTCAGATATTCGATTATTGCTGCTGCTTGATTCAT
TTACTACAGCCTGTGAGCGACTTTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21809.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis