Browse Element(s) Details


Os.54544.1.S1_at

Description gb:AK105568.1
DB_XREF= gi:32990777
TID=Os.54544.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-C10, full insert sequence.
FL= gb:AK105568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0748011/11WD-repeat protein 20, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07470Os.52668.1.S1_at11/1111+3778504..3784995expressed protein
LOC_Os11g07480Os.54544.1.S1_at11/1111+3785243..3789715WD-repeat protein 20, putative, expressed
LOC_Os11g07490Os.21809.1.S1_at9/1111+3791883..3797010RNA recognition motif family protein, expressed
LOC_Os11g07500Os.14143.1.S1_at11/1111+3797426..3804489DEAD/DEAH box helicase family protein, expressed
LOC_Os11g07510OsAffx.7036.1.S1_at11/1111+3804768..3808515Plant protein family protein
LOC_Os11g07520NANA11+3809206..3811755retrotransposon protein, putative, unclassified
LOC_Os11g07530OsAffx.30864.1.S1_at10/1111+3813721..3815661hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54544.1.S1_at--618--5351Chr11:3788653..3788677 (25 bp)
GAAGATCCCATATATTCCTTCGCTT
LOC_Os11g07480
Os.54544.1.S1_at--150--9251Chr11:3788668..3788692 (25 bp)
TCCTTCGCTTCACCAAAATCAGATG
LOC_Os11g07480
Os.54544.1.S1_at--365--3191Chr11:3788709..3788733 (25 bp)
CAATATCATGTATCGCTTCGCTTCT
LOC_Os11g07480
Os.54544.1.S1_at--878--4911Chr11:3788723..3788743 (21 bp)
GCTTCGCTTCTATTGGTCAGGATGC
LOC_Os11g07480
Os.54544.1.S1_at--1153--1591Chr11:3789224..3789248 (25 bp)
AGCTGCTTCTCTGGGATCTAACTAA
LOC_Os11g07480
Os.54544.1.S1_at--618--9771Chr11:3789258..3789282 (25 bp)
TAATGTGTCACTAACCCATGCTTCC
LOC_Os11g07480
Os.54544.1.S1_at--630--631Chr11:3789275..3789299 (25 bp)
ATGCTTCCAGCTGCTCAGAATCATC
LOC_Os11g07480
Os.54544.1.S1_at--10--1471Chr11:3789405..3789429 (25 bp)
AGAAGTACCAAAGCTCTCACCTGAG
LOC_Os11g07480
Os.54544.1.S1_at--964--10511Chr11:3789472..3789496 (25 bp)
TTCACCAGCGAATCGGTTATCACCG
LOC_Os11g07480
Os.54544.1.S1_at--520--4591Chr11:3789510..3789534 (25 bp)
GCGAATCACCACCAGGCCAAGAGAA
LOC_Os11g07480
Os.54544.1.S1_at--150--1531Chr11:3789566..3789590 (25 bp)
AGCATCCTGGTTCTTCCAAGCTGGT
LOC_Os11g07480
Target Sequence 
GAAGATCCCATATATTCCTTCGCTTCACCAAAATCAGATGAAACAAAAGAAAATACCAATATCATGTATCGCTTCGCTTC
TATTGGTCAGGATGCCCAGCTGCTTCTCTGGGATCTAACTAAGGATGAGCTTAATGTGTCACTAACCCATGCTTCCAGCT
GCTCAGAATCATCTAGCAGTGGAAGCTGCTCAGCGTCATCTAGCAGTGGAAGCTCTTCTACAGAAGACAGGGACAAAGAA
TTCCCCCTTGGCTTCCTTCACCCTTCTCCACGGCTGCAAGAAGTACCAAAGCTCTCACCTGAGGTTGCTCATCTGGTCGG
CGTGGAACCCCTCTTCACACTGGAATTCACCAGCGAATCGGTTATCACCGTATGTCGCAGGGGGCGAATCACCACCAGGC
CAAGAGAAGAAATCGACAATGAAACTGAAACCGACCAGCAGCATCCTGGTTCTTCCAAGCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis