Browse Element(s) Details


Os.52668.1.S1_at

Description gb:AK068683.1
DB_XREF= gi:32978700
TID=Os.52668.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52668 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013160N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160N01, full insert sequence.
FL= gb:AK068683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0747011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07460Os.46782.1.S1_at10/1111+3754391..3757470TCP family transcription factor containing protein, expressed
LOC_Os11g07470Os.52668.1.S1_at11/1111+3778504..3784995expressed protein
LOC_Os11g07480Os.54544.1.S1_at11/1111+3785243..3789715WD-repeat protein 20, putative, expressed
LOC_Os11g07490Os.21809.1.S1_at9/1111+3791883..3797010RNA recognition motif family protein, expressed
LOC_Os11g07500Os.14143.1.S1_at11/1111+3797426..3804489DEAD/DEAH box helicase family protein, expressed
LOC_Os11g07510OsAffx.7036.1.S1_at11/1111+3804768..3808515Plant protein family protein
LOC_Os11g07520NANA11+3809206..3811755retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009524cellular_componentphragmoplast
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52668.1.S1_at--1030--3811Chr11:3779045..3779069 (25 bp)
CTCCAGGGCTGGATGGACGATATCA
LOC_Os11g07470
Os.52668.1.S1_at--12--6251Chr11:3779034..3779058 (25 bp)
GATGGACGATATCACCGATGGCGCC
LOC_Os11g07470
Os.52668.1.S1_at--841--4131Chr11:3778971..3778995 (25 bp)
CGCTGAGCGGCTGAAGATCTCCATG
LOC_Os11g07470
Os.52668.1.S1_at--498--5312Chr11:3778914..3778938 (25 bp)
GAAGGTGCCGCCTGCGAAAACAAAG
LOC_Os11g07470
Os.52668.1.S1_at--819--5811Chr11:3778856..3778880 (25 bp)
GACCTGGATGAATTCGGGAACCCCA
LOC_Os11g07470
Os.52668.1.S1_at--1099--3771Chr11:3778824..3778848 (25 bp)
CTCGACGCTTTCAAAGCTCACGGCG
LOC_Os11g07470
Os.52668.1.S1_at--151--5571Chr11:3778725..3778749 (25 bp)
GAAAGCACAGTGAGGTTCTGTTTTT
LOC_Os11g07470
Os.52668.1.S1_at--318--3531Chr11:3778682..3778706 (25 bp)
CATGCGGCACATGTACAATTTTGTA
LOC_Os11g07470
Os.52668.1.S1_at--213--10211Chr11:3778622..3778646 (25 bp)
TATTACATGTGTGTCCCTTTTACCC
LOC_Os11g07470
Os.52668.1.S1_at--320--751Chr11:3778582..3778606 (25 bp)
ATGTATTATCAGTATTATCCTGCTG
LOC_Os11g07470
Os.52668.1.S1_at--1138--551Chr11:3778566..3778590 (25 bp)
ATCCTGCTGATTTCACTTACTGGTG
LOC_Os11g07470
Target Sequence 
CTCCAGGGCTGGATGGACGATATCACCGATGGCGCCGTGGAATACATGCCCGAGGATGAGGTGAAGAGNGCGGCCGCTGA
GCGGCTGAAGATCTCCATGGAGAGAATAGCCCTGCTCAAGGCAGCCAAANCGAAGGTGCCGCCTGCGAAAACAAAGGAAG
AAGAGGAAGAGGAGAAGAAGCAAAACGAGGACCTGGATGAATTCGGGAACCCCAAGGGCCCCTCGACGCTTTCAAAGCTC
ACGGCGGAGGAAGCTGAGCACCGTGCCCTCCAGGCGGCCGTTNTGCAGGAGTGGCATCAGCTGTGCAAGGAGAAAGCCAT
GAAAGCACAGTGAGGTTCTGTTTTTTTTTTNNCNTTTTTTTTGGCATGCGGCACATGTACAATTTTGTATCTGTTTCTCA
TTNTTTGCCCCCAATTTGTGTATGTATTACATGTGTGTCCCTTTTACCCCCATTTTGTGTATGTATGTATTATCAGTATT
ATCCTGCTGATTTCACTTACTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis