Browse Element(s) Details


Os.14143.1.S1_at

Description gb:AK121851.1
DB_XREF= gi:37991474
TID=Os.14143.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.14143 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033101M14, full insert sequence.
FL= gb:AK108748.1 gb:AK122056.1 gb:AK121851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0750011/11DEAD/DEAH box helicase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07470Os.52668.1.S1_at11/1111+3778504..3784995expressed protein
LOC_Os11g07480Os.54544.1.S1_at11/1111+3785243..3789715WD-repeat protein 20, putative, expressed
LOC_Os11g07490Os.21809.1.S1_at9/1111+3791883..3797010RNA recognition motif family protein, expressed
LOC_Os11g07500Os.14143.1.S1_at11/1111+3797426..3804489DEAD/DEAH box helicase family protein, expressed
LOC_Os11g07510OsAffx.7036.1.S1_at11/1111+3804768..3808515Plant protein family protein
LOC_Os11g07520NANA11+3809206..3811755retrotransposon protein, putative, unclassified
LOC_Os11g07530OsAffx.30864.1.S1_at10/1111+3813721..3815661hypothetical protein
LOC_Os11g07540OsAffx.7037.1.S1_at11/1111+3817727..3819518hypothetical protein
LOC_Os11g07550OsAffx.30864.2.S1_at10/1111+3820417..3822034hypothetical protein
LOC_Os11g07560OsAffx.29033.1.S1_at1/1111+3823371..3824145hypothetical protein
LOC_Os11g07570OsAffx.30865.1.S1_at11/1111+3825735..3827323hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006260biological_processDNA replication
GO:0010093biological_processspecification of floral organ identity
GO:0016070biological_processRNA metabolism
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0003887molecular_functionDNA-directed DNA polymerase activity
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14143.1.S1_at--12--8711Chr11:3798733..3798757 (25 bp)
TGTCGAATCAACTTGTAGGCCCTAC
LOC_Os11g07500
Os.14143.1.S1_at--465--10071Chr11:3798718..3798742 (25 bp)
TAGGCCCTACCTGATGGATGTCATA
LOC_Os11g07500
Os.14143.1.S1_at--301--7991Chr11:3798703..3798727 (25 bp)
GGATGTCATATACTGTTGGTCAAAG
LOC_Os11g07500
Os.14143.1.S1_at--860--3551Chr11:3798448..3798472 (25 bp)
CATACGGCTGGCTAGAAGACTGGAT
LOC_Os11g07500
Os.14143.1.S1_at--520--2451Chr11:3797743..3797767 (25 bp)
AACAAGTTCGGAGCGGCCAGCGACA
LOC_Os11g07500
Os.14143.1.S1_at--1085--7671Chr11:3797708..3797732 (25 bp)
GGGTATCATGTTCGCCAACTCATTG
LOC_Os11g07500
Os.14143.1.S1_at--328--5291Chr11:3797673..3797697 (25 bp)
GAAGGTCCAGCAGTTGTAACGCCGT
LOC_Os11g07500
Os.14143.1.S1_at--1095--7031Chr11:3797658..3797682 (25 bp)
GTAACGCCGTATGTTAGCAAAGCAA
LOC_Os11g07500
Os.14143.1.S1_at--925--7051Chr11:3797601..3797625 (25 bp)
GTAACCCATATATCAGTAGAACCCT
LOC_Os11g07500
Os.14143.1.S1_at--163--10371Chr11:3797571..3797595 (25 bp)
TTTTTAGGAGGTAAGCTCTCTGCAT
LOC_Os11g07500
Os.14143.1.S1_at--210--9471Chr11:3797553..3797577 (25 bp)
TCTGCATTAGCAGCCCGTAGGTAAC
LOC_Os11g07500
Target Sequence 
TGTCGAATCAACTTGTAGGCCCTACCTGATGGATGTCATATACTGTTGGTCAAAGGGGGCCACTTTTGGAGAGGTGATAG
AAATGACTGACATTTTTGAAGGAAGTATCATACGGCTGGCTAGAAGACTGGATGAATTTCTGAATCAGTTGAAAGCTGCT
GCTCAAGCTGTTGGTGAGGTTAACCTTGAGAACAAGTTCGGAGCGGCCAGCGACAGCTTACGTCGGGGTATCATGTTCGC
CAACTCATTGTATCTGTGATGAAGGTCCAGCAGTTGTAACGCCGTATGTTAGCAAAGCAAATGTAGTTATTCTTTTTGAG
AAGGCATGAAATGTAACCCATATATCAGTAGAACCCTGTAGGTTTTTAGGAGGTAAGCTCTCTGCATTAGCAGCCCGTAG
GTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14143.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis