Browse Element(s) Details


Os.21812.2.S1_a_at

Description gb:AK065199.1
DB_XREF= gi:32975217
TID=Os.21812.2
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21812 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative leucine-rich repeat transmembrane protein kinase (OJ1743A09.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002E20, full insert sequence.
FL= gb:AK065199.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1225011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12220OsAffx.10056.1.S1_x_at11/113+6389686..6390687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12230Os.40419.1.S1_at11/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12230Os.48013.1.A1_at9/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12236Os.56153.1.S1_at11/113+6400905..6401527expressed protein
LOC_Os03g12242Os.15781.1.S1_at10/113+6403508..6406035expressed protein
LOC_Os03g12242Os.21812.4.S1_x_at6/113+6403508..6406035expressed protein
LOC_Os03g12250Os.21812.2.S1_a_at11/113+6413971..6417612Leucine Rich Repeat family protein, expressed
LOC_Os03g12260Os.26879.1.S1_at11/113+6422568..6424588Cytochrome P450 family protein, expressed
LOC_Os03g12270Os.45954.1.S1_at11/113+6432197..6434699mannitol dehydrogenase, putative, expressed
LOC_Os03g12280NANA3+6435583..6436190hypothetical protein
LOC_Os03g12290Os.12728.1.S1_at11/113+6437026..6441842Glutamine synthetase root isozyme 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21812.2.S1_a_at--517--9711Chr03:6416981..6417005 (25 bp)
TCAACGAGGAGGGACTCGACCTGCC
LOC_Os03g12250
Os.21812.2.S1_a_at--1118--8371Chr03:6417238..6417262 (25 bp)
GGCGAGGAGCCTTCACTATAACCGA
LOC_Os03g12250
Os.21812.2.S1_a_at--650--2031Chr03:6417252..6417276 (25 bp)
ACTATAACCGACCAGCCGACATTGC
LOC_Os03g12250
Os.21812.2.S1_a_at--968--5671Chr03:6417269..6417293 (25 bp)
GACATTGCCGTCTGGATCACCGTAC
LOC_Os03g12250
Os.21812.2.S1_a_at--632--8551Chr03:6417281..6417305 (25 bp)
TGGATCACCGTACATCGATCTCAGC
LOC_Os03g12250
Os.21812.2.S1_a_at--628--451Chr03:6417298..6417322 (25 bp)
ATCTCAGCCTCAGCGAACGGAAATT
LOC_Os03g12250
Os.21812.2.S1_a_at--280--1231Chr03:6417340..6417364 (25 bp)
AGTTCTTTGCATGGATCTTGCTCCC
LOC_Os03g12250
Os.21812.2.S1_a_at--805--10351Chr03:6417452..6417476 (25 bp)
TTTTTGGGCCTTTCTCTCACGGGCT
LOC_Os03g12250
Os.21812.2.S1_a_at--276--3751Chr03:6417467..6417491 (25 bp)
CTCACGGGCTTTGATTCTATTCTAT
LOC_Os03g12250
Os.21812.2.S1_a_at--299--9551Chr03:6417482..6417506 (25 bp)
TCTATTCTATAGCACATGTCACTGT
LOC_Os03g12250
Os.21812.2.S1_a_at--1030--7091Chr03:6417499..6417523 (25 bp)
GTCACTGTACTCTTTGATTCTTGGA
LOC_Os03g12250
Target Sequence 
TCAACGAGGAGGGACTCGACCTGCCGCGCTGGGNTGCAGTCCGTCGTCCGGGAGGNAGTGGACCGCCGAGGTGTTCGACC
AGGANCTCCTCAGGTACCAGAACGTCGAGGAGGAGATGGTGCAGCTCCTCCAGCTCGCCATCGACTGCTCGGCGCAGCAC
CCCGACAGGCGGCCGTCCATGTCCGAGGTGGCCGCGAGGATCGACGAGATCCGCCGCTCCAGCCTCGGCGACCGTCCGGC
CACCGACAGCGCCGGCGAGGGCGAGGAGCCTTCACTATAACCGACCAGCCGACATTGCCGTCTGGATCACCGTACATCGA
TCTCAGCCTCAGCGAACGGAAATTAAGTTGGAGAATTGCTTAGTTCTTTGCATGGATCTTGCTCCCCCAGGCTACTTTTG
GTTCATCAGCAACTTGTGCATGTTTTTTTCATTACTTTTTCTTTCTTCTTCCTTTCTTTTTTTTCCCTTCTTTTTTTTGG
GCCTTTCTCTCACGGGCTTTGATTCTATTCTATAGCACATGTCACTGTACTCTTTGATTCTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21812.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis