Browse Element(s) Details


Os.21824.1.S1_at

Description gb:AK106976.1
DB_XREF= gi:32992185
TID=Os.21824.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0503C12.12 (P0503C12.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-H02, full insert sequence.
FL= gb:AK073811.1 gb:AK060895.1 gb:AK106976.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5505011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g55000Os.27974.1.S1_at11/111+31956094..31957586expressed protein
LOC_Os01g55010Os.36306.2.S1_x_at11/111+31960894..31961966hypothetical protein
LOC_Os01g55020Os.36306.1.S1_at10/111+31962441..31964623expressed protein
LOC_Os01g55030Os.10963.1.S1_at11/111+31965437..31967260DNA-binding protein, putative, expressed
LOC_Os01g55040Os.24889.1.S1_at11/111+31968079..31975208callose synthase, putative, expressed
LOC_Os01g55040Os.24889.2.S1_x_at11/111+31968079..31975208callose synthase, putative, expressed
LOC_Os01g55050Os.21824.1.S1_at11/111+31978464..31983284expressed protein
LOC_Os01g55060NANA1+31986369..31986638hypothetical protein
LOC_Os01g55070OsAffx.23796.2.S1_at11/111+31988938..31990929pentatricopeptide, putative, expressed
LOC_Os01g55080NANA1+31996576..31996863hypothetical protein
LOC_Os01g55090NANA1+31999045..32003204transposon protein, putative, Mutator sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000904biological_processcellular morphogenesis during differentiation
GO:0009826biological_processunidimensional cell growth
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004672molecular_functionprotein kinase activity
GO:0009927molecular_functionhistidine phosphotransfer kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21824.1.S1_at--347--2871Chr01:31978599..31978623 (25 bp)
AAGTGATGCCATCTGTTGACTGTTG
LOC_Os01g55050
Os.21824.1.S1_at--852--8851Chr01:31978596..31978620 (25 bp)
TGATGCCATCTGTTGACTGTTGCGT
LOC_Os01g55050
Os.21824.1.S1_at--443--1971Chr01:31978581..31978605 (25 bp)
ACTGTTGCGTATTTGTACGATGTAC
LOC_Os01g55050
Os.21824.1.S1_at--1017--6411Chr01:31978544..31978568 (25 bp)
GATCTTAATCTTCATGTACTTCCTG
LOC_Os01g55050
Os.21824.1.S1_at--1159--9011Chr01:31978521..31978545 (25 bp)
TGCACGTGTACCACCAACTTCTTTG
LOC_Os01g55050
Os.21824.1.S1_at--722--8751Chr01:31978515..31978539 (25 bp)
TGTACCACCAACTTCTTTGCAATTG
LOC_Os01g55050
Os.21824.1.S1_at--626--2051Chr01:31978505..31978529 (25 bp)
ACTTCTTTGCAATTGGACCATTTCA
LOC_Os01g55050
Os.21824.1.S1_at--278--9552Chr11:6353843..6354000 (25 bp)
TCTTTGCAATTGGACCATTTCAGCA
NONE
Os.21824.1.S1_at--921--10511Chr01:31978484..31978508 (25 bp)
TTCAGCAGATCTGTGCTAATCCAAA
LOC_Os01g55050
Os.21824.1.S1_at--1058--5031Chr01:31978480..31978504 (25 bp)
GCAGATCTGTGCTAATCCAAATTAT
LOC_Os01g55050
Os.21824.1.S1_at--1154--7291Chr01:31978472..31978496 (25 bp)
GTGCTAATCCAAATTATTGCCAGGT
LOC_Os01g55050
Target Sequence 
AAGTGATGCCATCTGTTGACTGTTGCGTATTTGTACGATGTACATATTATACATTGATCTTAATCTTCATGTACTTCCTG
CACGTGTACCACCAACTTCTTTGCAATTGGACCATTTCAGCAGATCTGTGCTAATCCAAATTATTGCCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis