Browse Element(s) Details


Os.21851.1.S1_at

Description gb:AK105628.1
DB_XREF= gi:32990837
TID=Os.21851.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.21851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-200-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-200-D03, full insert sequence.
FL= gb:AK121283.1 gb:AK105628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4557011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45520Os.55511.1.S1_at11/114+26712380..26713541Integral membrane protein, expressed
LOC_Os04g45530OsAffx.4098.1.S1_at11/114+26718949..26719543hypothetical protein
LOC_Os04g45540NANA4+26721433..26727660retrotransposon protein, putative, unclassified
LOC_Os04g45550NANA4+26728507..26731261retrotransposon protein, putative, unclassified
LOC_Os04g45560NANA4+26734313..26734822hypothetical protein
LOC_Os04g45570Os.21851.1.S1_at11/114+26735390..26741178expressed protein
LOC_Os04g45580Os.54166.1.S1_at11/114+26743354..26748966kinesin heavy chain, putative, expressed
LOC_Os04g45580Os.20403.2.S1_x_at1/114+26743354..26748966kinesin heavy chain, putative, expressed
LOC_Os04g45590OsAffx.14278.1.S1_at11/114+26756515..26757416glyoxalase family protein, expressed
LOC_Os04g45600Os.47301.1.A1_at11/114+26758358..26759578expressed protein
LOC_Os04g45610Os.18729.1.S1_at11/114+26759553..26763085expressed protein
LOC_Os04g45610Os.18729.2.S1_at9/114+26759553..26763085expressed protein
LOC_Os04g45620OsAffx.4099.1.S1_at11/114+26764744..26765501hypothetical protein
LOC_Os04g45620OsAffx.4542.1.S1_at2/114+26764744..26765501hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21851.1.S1_at--1011--2791Chr04:26735941..26735965 (25 bp)
AAGATGCCGCAGTTGGCTCTCTGGT
LOC_Os04g45570
Os.21851.1.S1_at--796--3171Chr04:26735879..26735903 (25 bp)
AATTGTCCATCTCAAGCATCAGCGG
LOC_Os04g45570
Os.21851.1.S1_at--904--9531Chr04:26735849..26735873 (25 bp)
TCTAGTGAAGCAGCCTCAACCAGTT
LOC_Os04g45570
Os.21851.1.S1_at--827--3431Chr04:26735829..26735853 (25 bp)
CAGTTCTGTCGTGTCCCGTAGGAAA
LOC_Os04g45570
Os.21851.1.S1_at--329--5091Chr04:26735798..26735822 (25 bp)
GCACTCGAAGAGCTCCAATCATTTA
LOC_Os04g45570
Os.21851.1.S1_at--368--6731Chr04:26735701..26735725 (25 bp)
GTTCTTTCCTTCGTAAACTTCACAG
LOC_Os04g45570
Os.21851.1.S1_at--342--3291Chr04:26735659..26735683 (25 bp)
CAAAGCGGGCTATGCGGTGAGCTCA
LOC_Os04g45570
Os.21851.1.S1_at--448--6071Chr04:26735564..26735588 (25 bp)
GAGTTACCACTGATTTCTGCGAGAA
LOC_Os04g45570
Os.21851.1.S1_at--389--5211Chr04:26735513..26735537 (25 bp)
GAATTACGCCACTGTTTATACGCTT
LOC_Os04g45570
Os.21851.1.S1_at--973--7731Chr04:26735479..26735503 (25 bp)
GGTGGGAGCCTCTTGACGAATATAG
LOC_Os04g45570
Os.21851.1.S1_at--522--5731Chr04:26735424..26735448 (25 bp)
GACTGTACTGACTACTGTGCCGAGT
LOC_Os04g45570
Target Sequence 
AAGATGCCGCAGTTGGCTCTCTGGTGCACCTGCTCAAAACTGCACGCCCTCTGCGAAACTCTAATTGTCCATCTCAAGCA
TCAGCGGTTGAATCTAGTGAAGCAGCCTCAACCAGTTCTGTCGTGTCCCGTAGGAAATCTGATGCACTCGAAGAGCTCCA
ATCATTTAAAGAAATCAAGGAGAGGTTGATGTCCCGGAGTAGAGCAAAACAGCAAGAGCCACCAGAAAAACCATAGCACC
GTTCTTTCCTTCGTAAACTTCACAGGTGAAGATCCCCTACCACAAAGCGGGCTATGCGGTGAGCTCAGTGACGTTATGCT
AAGGAATTCGTGTGTATATAACTGATGGACTGATGCTTTTAGTTAAAGAGAAGATACGAGTTACCACTGATTTCTGCGAG
AATCCCTCGCCATTCTTGAACTCTAGAAGAATTACGCCACTGTTTATACGCTTTTATACGTAGGTGGGAGCCTCTTGACG
AATATAGCAGCTCCAGCGTGTGCGTGTGTAATTATGTGACTGTACTGACTACTGTGCCGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis